Plant FIBer expression Database

Potri.002G216100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44520 488 / 2e-171 COX10 cytochrome c oxidase 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G093600
[exp]
47 / 2e-05 AT4G23660 413 / 2e-143 polyprenyltransferase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043358
[exp]
498 / 1e-175 AT2G44520 501 / 6e-177 cytochrome c oxidase 10 (.1)
Lus10019514
[exp]
469 / 5e-156 AT2G44520 458 / 7e-152 cytochrome c oxidase 10 (.1)
Lus10033224
[exp]
45 / 7e-05 AT4G23660 456 / 3e-160 polyprenyltransferase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0613 Terp_synthase PF01040 UbiA UbiA prenyltransferase family
Representative CDS sequence
>Potri.002G216100.1 pacid=42778480 polypeptide=Potri.002G216100.1.p locus=Potri.002G216100 ID=Potri.002G216100.1.v4.1 annot-version=v4.1
ATGTGGAGAAATACCTGCAAGCTGTTATCAAACCCTAATTATAATCATAATCATCTGAAATCCTCCAACTATTCCTCATCCAATTTCAATGTTGTCTTTG
GATGGGCACCATCACTAGTAACTCACTACCGCTCATCCCCATCCCCATCCACTTCTGGTTCCTTAAAATTAGGGATTTCAAGTCACAAATCCGATGGAAT
TCGATCCTTTTCCTCAAGTTCTGCTGCCGGCCCTGCAGTTGTTGATCATCTGTCCCCGTCTCTGGCTTCGGCCGTGCAGTTGGGTCGCCACTACACTCGA
TGCTATTGGGAGCTCTCCAAAGCTCGCCTGAGCATGTTAGTTGTGGCGACTTCTGGAACGGGATATGTCCTGGGGAGTGCAGGGAGTGCCGTTGATTTGG
CTGGACTTTGTTGGACTTGTGCTGGTACTATGATGGTTGCTTCATCTGCTAATTCTCTTAATCAGGTTTTTGAGAAGAATAACGATGCCAAAATGAAAAG
AACAAGGCTAAGACCATTACCTTCAAGGCGCATGACAATACCTCATGCCCTCACCTGGGCATCTTCTGTTGGGGTAGCTGGCACTGCTATACTAGCTTGC
AAGGCTAATATGTTGGCAGCTGGGCTTGGAGTTTCCAATCTCATCCTCTATGCATTTGTCTATACACCACTGAAGCAGATTCACCCAGTCAACACATGGG
TTGGGGCTGTTGTTGGTGCTATTCCACCACTTCTAGGGTGGGCTGCAGCTTCTGGCGAGGTTTCACTGAACTCCATGATTCTCCCTGCTGCTCTGTATTT
TTGGCAAATACCCCATTTTATGGCCCTCGCATATCTTTGTCGCAGTGATTATGCTGCTGGAGGGTTCAAGATGTTCTCTCTTGCTGATGCTTCTGGTCGG
AGAACTGCTGCAGTAGCACTGAGGAACTGCCTTTATCTGGTTCCATTGGGTTTTTTAGCCTGTGATTGGGGTGTGACTTCCAGTTGGTTTTGTCTTGAAT
CATCTCTTATTACTCTAGCAATAAGTGCCCTAGCATTTTCATTCTATCTGAATCGAACAACACAGAATGCAAGGAGGATGTTTCATGCCAGCCTTTTGTA
CCTTCCTGTATTCATGTCCGGGCTACTTTTTCACCGTGTCTCCGATAATCAACAATGCCTTTCAGAAGACAGTTTAGGTAGGATCACTGAGCTGGAACCC
GTAGTGCAAGGCAGGGAAAACCTCAAGCATGGGAACCAGGAAACACATTCCGCAATTGGCAAGCAAGCACGTGCACCTGTAGCATATGCTTCCGCAGCAC
CATTTCCTTTTCTTCCTGCACCTTCATACACAACTTCCTAA
AA sequence
>Potri.002G216100.1 pacid=42778480 polypeptide=Potri.002G216100.1.p locus=Potri.002G216100 ID=Potri.002G216100.1.v4.1 annot-version=v4.1
MWRNTCKLLSNPNYNHNHLKSSNYSSSNFNVVFGWAPSLVTHYRSSPSPSTSGSLKLGISSHKSDGIRSFSSSSAAGPAVVDHLSPSLASAVQLGRHYTR
CYWELSKARLSMLVVATSGTGYVLGSAGSAVDLAGLCWTCAGTMMVASSANSLNQVFEKNNDAKMKRTRLRPLPSRRMTIPHALTWASSVGVAGTAILAC
KANMLAAGLGVSNLILYAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASGEVSLNSMILPAALYFWQIPHFMALAYLCRSDYAAGGFKMFSLADASGR
RTAAVALRNCLYLVPLGFLACDWGVTSSWFCLESSLITLAISALAFSFYLNRTTQNARRMFHASLLYLPVFMSGLLFHRVSDNQQCLSEDSLGRITELEP
VVQGRENLKHGNQETHSAIGKQARAPVAYASAAPFPFLPAPSYTTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44520 COX10 cytochrome c oxidase 10 (.1) Potri.002G216100
[exp]
0 1
AT4G19710 AK-HSDHII, AK-H... aspartate kinase-homoserine de... Potri.019G071700
[exp]
1.73 0.7547 Pt-HSDH.1
AT3G61170 Tetratricopeptide repeat (TPR)... Potri.002G155100
[exp]
2.64 0.7159
AT3G14110 FLU FLUORESCENT IN BLUE LIGHT, Tet... Potri.001G166000
[exp]
4.89 0.7603
AT3G08780 unknown protein Potri.016G126200
[exp]
6.63 0.7025
AT1G33810 unknown protein Potri.019G076400
[exp]
7.48 0.7674
AT5G63910 FCLY farnesylcysteine lyase (.1) Potri.007G101600
[exp]
9.16 0.7228
AT3G24730 mRNA splicing factor, thioredo... Potri.001G287600
[exp]
12.64 0.6517
AT1G29330 ATERD2, AERD2, ... ARABIDOPSIS THALIANA ENDOPLASM... Potri.011G071200
[exp]
12.72 0.6768 Pt-ERD2.1
Potri.001G131500
[exp]
13.22 0.7272
AT3G13730 CYP90D1 "cytochrome P450, family 90, s... Potri.001G200100
[exp]
14.42 0.7283 CYP90.1

Potri.002G216100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.