Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58230 784 / 0 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 452 / 6e-158 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 439 / 9e-153 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 218 / 2e-65 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 194 / 6e-57 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 123 / 7e-31 Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 83 / 2e-17 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G67320 82 / 2e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G18830 69 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G63460 69 / 4e-12 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179700 [exp] 848 / 0 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 467 / 8e-164 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 461 / 1e-161 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 205 / 7e-61 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 201 / 1e-59 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 199 / 2e-58 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 126 / 9e-32 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 118 / 6e-29 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 91 / 5e-20 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020916 [exp] 803 / 0 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 801 / 0 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 732 / 0 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 719 / 0 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 458 / 2e-160 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 449 / 9e-157 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027632 [exp] 188 / 3e-54 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 141 / 3e-37 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 109 / 5e-26 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 108 / 2e-25 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF12265 [poplar] [flax] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Potri.002G216200.1 pacid=42777509 polypeptide=Potri.002G216200.1.p locus=Potri.002G216200 ID=Potri.002G216200.1.v4.1 annot-version=v4.1 ATGGGAAAAGACGAAGAGGAAATGAGGGGAGAGATAGAGGAACGATTGATAAACGAAGAGTACAAGATATGGAAAAAGAACACTCCTTTCCTCTACGATC TTGTTATCACTCATGCCCTCGAATGGCCTTCTCTCACCGTCGAATGGCTTCCAGACCGTGATGAGCCCCCTGGCAAGGACTACTCCGTCCAAAAGATGAT TCTTGGTACCCACACCTCCGAAAACGAGCCTAACTACCTTATGCTCGCCCAGGTCCAGCTTCCTCTCGATGATGCCGAGAACGACGCCCGCCACTACGAC GACGACCGCTCCGATTTTGGTGGCTTTGGCGCCGCCAATGGCAAGGTGCAAATAATTCAGCAAATAAATCATGATGGGGAGGTGAATAGGGCACGGTATA TGCCACAAAACCCATTTATGATAGCTACCAAGACTGTTAGTGCTGAGGTTTATGTCTTTGACTATAGCAAGCACCCATCTAAGCCTCCTCTTGATGGTGC ATGCACCCCTGATTTGAGATTGAGGGGTCACAACACTGAAGGCTATGGTTTGTCTTGGAGTAAGTTTAAAGAAGGTTATTTGCTTAGTGGTTCTGATGAT GCCCAGATTTGCCTGTGGGACATTAATGCCACTCCCAAGAACAAGTCCCTTGATGCTACGCAAATCTTTAAGGTTCATGAAGGTGTTGTAGAAGATGTAG CATGGCATTTGAGACATGAACACTTGTTTGGTTCTGTTGGGGATGATCAATACCTGCTTATATGGGATCTCCGAACTCCGTCTGTGACCAAGCCTGTCCA TTCTGTTGTTGCTCACCAGAGTGAGGTTAACTGCTTGGCTTTTAATCCTTTTAATGAATGGATTGTTGCCACGGGATCTACTGATAAGACTGTCAAGTTA TTTGACATACGGAAGATCAATACTGCACTTCACACCTTTAACTGTCACAAGGAGGAGGTTTTCCAAGTCGGATGGAATCCCAAGAATGAGACTATCTTAG CTTCTTGTTGCCTTGGAAGAAGGCTCATGATCTGGGATCTTAGCAGGATTGATATTGAGCAGACACCTGAGGATGCTGAAGATGGCCCACCAGAATTGCT TTTCATTCATGGTGGTCACACGAGTAAAATATCAGATTTTTCGTGGAACCCATGTGATGATTGGGTTATTGCTAGTGTAGCTGAGGATAACATTCTTCAA ATATGGCAGATGGCAGAGAATATCTACCATGATGAAGATGATATACCAGCAGATGAATCTACTAAAGATTCCTAG
AA sequence Show only first row Show all	>Potri.002G216200.1 pacid=42777509 polypeptide=Potri.002G216200.1.p locus=Potri.002G216200 ID=Potri.002G216200.1.v4.1 annot-version=v4.1 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARHYD DDRSDFGGFGAANGKVQIIQQINHDGEVNRARYMPQNPFMIATKTVSAEVYVFDYSKHPSKPPLDGACTPDLRLRGHNTEGYGLSWSKFKEGYLLSGSDD AQICLWDINATPKNKSLDATQIFKVHEGVVEDVAWHLRHEHLFGSVGDDQYLLIWDLRTPSVTKPVHSVVAHQSEVNCLAFNPFNEWIVATGSTDKTVKL FDIRKINTALHTFNCHKEEVFQVGWNPKNETILASCCLGRRLMIWDLSRIDIEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCDDWVIASVAEDNILQ IWQMAENIYHDEDDIPADESTKDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G216200 [exp]	0	1
AT4G31980			unknown protein		Potri.003G209500 [exp]	2.23	0.9140
AT3G46870			Pentatricopeptide repeat (PPR)...		Potri.009G038200 [exp]	4.00	0.8718
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.012G007400 [exp]	4.24	0.8491
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	7.07	0.8689	ENOD8.2
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243500 [exp]	16.58	0.8430	Pt-EU3.2
AT2G34730			myosin heavy chain-related (.1...		Potri.001G466800 [exp]	17.54	0.8171
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	18.97	0.8429
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Potri.002G179300 [exp]	20.49	0.8290
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	20.73	0.8434
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	21.16	0.8481

Compare expression of checked genes

Potri.002G216200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.