Plant FIBer expression Database

Potri.002G216266 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G216266.1 pacid=42779253 polypeptide=Potri.002G216266.1.p locus=Potri.002G216266 ID=Potri.002G216266.1.v4.1 annot-version=v4.1
ATGTCTGCGTTCTCTTGCTACAGATCTAGAGCTCTTGTCTTCGGGTCAACTGTGGATGACTCTTTGCCTTTCCTTTTTCGGGTACAACGGTTTCTGCTAA
CGAAGCCTTTGGTCCAAATCTCGATTATACTTTTGGTAGTGCCTCCTGCCACCCAGACTCTTGCCATCCCAGATCTCAATCGAACACCAACGAATAGCAC
ACCCAAAGTTCTAATTGACGTTTTGGTTGTCGTCTTCCCCGATCTATGGGATTTTGATAAAGTGATGGCGGGTTGCTCCTTCGCAGAGGATGCTTTTGAT
GGAGGTTTGATTTTCTGGCCTCTTCCTTTTTGTGCCATGGAATTGCGATTTGATTCCCCTGTTGGGGTCAAAGGGCTTTTTGTTTGTGGGTACAGAATCC
CTAGGTTGGGATTTGTGCCGGTGTAG
AA sequence
>Potri.002G216266.1 pacid=42779253 polypeptide=Potri.002G216266.1.p locus=Potri.002G216266 ID=Potri.002G216266.1.v4.1 annot-version=v4.1
MSAFSCYRSRALVFGSTVDDSLPFLFRVQRFLLTKPLVQISIILLVVPPATQTLAIPDLNRTPTNSTPKVLIDVLVVVFPDLWDFDKVMAGCSFAEDAFD
GGLIFWPLPFCAMELRFDSPVGVKGLFVCGYRIPRLGFVPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G216266
[exp]
0 1
AT5G47530 Auxin-responsive family protei... Potri.019G096300
[exp]
6.70 0.5637
AT4G39950 CYP79B2 "cytochrome P450, family 79, s... Potri.004G055200
[exp]
17.66 0.5923 Pt-CYP79.1
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.008G161001
[exp]
24.24 0.5566
Potri.002G131650
[exp]
48.50 0.5495
Potri.006G047250
[exp]
52.82 0.4884
Potri.007G046150
[exp]
55.82 0.4944
AT1G71770 PAB5 poly(A)-binding protein 5 (.1)... Potri.001G038975
[exp]
59.69 0.5312
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.004G043600
[exp]
61.96 0.4698
AT3G11310 unknown protein Potri.014G056100
[exp]
69.45 0.5144
AT5G28780 PIF1 helicase (.1) Potri.001G165240
[exp]
72.73 0.4961

Potri.002G216266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.