Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33150 660 / 0 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT1G04710 629 / 0 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1) AT5G48880 623 / 0 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3) AT5G48230 184 / 2e-53 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT5G47720 179 / 1e-51 Thiolase family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051900 [exp] 669 / 0 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 638 / 0 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.006G004400 [exp] 177 / 1e-50 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.014G168700 [exp] 172 / 9e-49 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.013G097500 [exp] 83 / 8e-20 AT1G04710 94 / 2e-24 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011879 [exp] 676 / 0 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10022812 [exp] 670 / 0 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10023672 [exp] 664 / 0 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011748 [exp] 620 / 0 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10039109 [exp] 187 / 9e-55 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10038749 [exp] 183 / 1e-52 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10006362 [exp] 170 / 3e-48 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10012317 [exp] 173 / 1e-46 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00108 [poplar] [flax] Thiolase_N Thiolase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02803 [poplar] [flax] Thiolase_C Thiolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G216400.1 pacid=42778226 polypeptide=Potri.002G216400.1.p locus=Potri.002G216400 ID=Potri.002G216400.1.v4.1 annot-version=v4.1 ATGGAGAAGGCATTTAACAGACAAAAAGTTCTTCTTGCTCATCTGCAACCCACTTCTCCTTCTCCTCTTCTCTCTGCTTCAATTTGTGCTGCTGGGGACA GTGCTGCATATCACCGGACAGCTGCTTTTGGTGATGATATTGTGATTGTGGCTGCGTACCGTACTGCTATTTGCAAAGCCAGGCGTGGTGGGTTCAAGGA TACCTTTCCCGATGATCTACTTGGATTTGTATTAAAGGCAGTGGTAGAAAAAACAAATGTGAATCCAAGTGAAGTTGGGGACATCGTTGTTGGAACCGTT CTGGCACCTGGTTCAGAAAGAGCAATTGAGTGCAGGATGGCAGCGTTTTATGCTGGTTTCCCTGATACGGTGCCCCTCAGAACAGTGAACAGGCAATGCT CATCTGGCCTCCAGGCAGTTGCTGATGTTGCTGCATCCATAAAAGCAGGATATTATGACATTGGTATTGCAGCTGGGTTGGAGTGCATGACAGTGAACGG CATTAGGAGTGTTCCCCAAGTTAACCCAAGAGTAGAGGCCTTTCAACAAGCCCGAGATTGTCTTCTTCCTATGGGTCTGACTTCTGAAAATGTTGCTCAG CGTTATGGCGTGACACGACAAGACCAAGATCAGGCTGCTGTTGATTCTCATAGAAAAGCGGCAGCTGCAAGAGCATCTGGTAAATTCAAAGATGAAATTA TCCCAGTTACTACAAAGATTGTGGACCCAGAAACTGGTATACAGAAGGTTATCACAATTTCAGAGGATGATGGCATTCGACCGAACTCAAACCTGGCAGA GCTGTCCAGGCTGAAACCTGCATTCAAAAAGGATGGATCCACCACTGCTGGCAATGCTAGCCAAGTCAGTGATGGTGCTGGAGCTGTACTTCTTATGAAA AGAAGCCTTGCTGCACAGAAGGGACTTCCAATTCTTGGAGTGTTCAGGAGTTTTGCTGCTGTTGGTGTAGATCCTGCTGTAATGGGTGTAGGCCCAGCTG CTGCAATTCCAGCGGCAGTGCAAGCTGCTGGACTTGAGCTTAATGATATTGACCTGTTTGAAATAAATGAGGCATTTGCATCACAATATGTTTATTGTAT AAAGAAGCTGGAGCTTGACCCTGAGAAAGTTAATGTGAATGGCGGTGCAATTGCTCTTGGGCATCCTTTAGGTGCTACAGGTGCCCGCTGTGTTGGAACT CTTCTGAATGAGATGAAGCGTCGTGGGAAAGATAGTCGCTTTGGAGTGATCTCAATGTGCATAGGGTCTGGCATGGGGGCTGCTGCTGTTTTCGAGAGAG GAGACTGTGTCGACGCACTATGCAATGTTCGAAAGGTGGGAAGCAACGACCTTCTGTCAAAAGATGCTCGTTAG
AA sequence Show only first row Show all	>Potri.002G216400.1 pacid=42778226 polypeptide=Potri.002G216400.1.p locus=Potri.002G216400 ID=Potri.002G216400.1.v4.1 annot-version=v4.1 MEKAFNRQKVLLAHLQPTSPSPLLSASICAAGDSAAYHRTAAFGDDIVIVAAYRTAICKARRGGFKDTFPDDLLGFVLKAVVEKTNVNPSEVGDIVVGTV LAPGSERAIECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVAASIKAGYYDIGIAAGLECMTVNGIRSVPQVNPRVEAFQQARDCLLPMGLTSENVAQ RYGVTRQDQDQAAVDSHRKAAAARASGKFKDEIIPVTTKIVDPETGIQKVITISEDDGIRPNSNLAELSRLKPAFKKDGSTTAGNASQVSDGAGAVLLMK RSLAAQKGLPILGVFRSFAAVGVDPAVMGVGPAAAIPAAVQAAGLELNDIDLFEINEAFASQYVYCIKKLELDPEKVNVNGGAIALGHPLGATGARCVGT LLNEMKRRGKDSRFGVISMCIGSGMGAAAVFERGDCVDALCNVRKVGSNDLLSKDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	0	1
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	2.44	0.7510
AT5G12470			Protein of unknown function (D...		Potri.009G051800 [exp]	6.00	0.7292
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.005G033800 [exp]	13.71	0.5983
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.016G113300 [exp]	14.07	0.7009
AT1G51630			O-fucosyltransferase family pr...		Potri.008G008300 [exp]	16.49	0.6804
AT3G62580			Late embryogenesis abundant pr...		Potri.002G197800 [exp]	19.18	0.7216
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.010G117900 [exp]	20.85	0.6410
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.016G046701 [exp]	22.00	0.7338
AT3G62160			HXXXD-type acyl-transferase fa...		Potri.014G113600 [exp]	25.92	0.6633
AT5G63940			Protein kinase protein with ad...		Potri.007G102400 [exp]	27.05	0.5879

Compare expression of checked genes

Potri.002G216400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.