Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25330 88 / 9e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046200 [exp] 44 / 0.0001 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012314 [exp] 249 / 2e-79 AT4G25330 104 / 5e-26 unknown protein Lus10006358 [exp] 116 / 2e-29 AT4G25330 65 / 4e-12 unknown protein Lus10012313 [exp] 92 / 1e-21 ND / Lus10006359 [exp] 83 / 9e-19 ND / Lus10009776 [exp] 54 / 9e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF16719 [poplar] [flax] SAWADEE SAWADEE domain
Representative CDS sequence Show only first row Show all	>Potri.002G216900.1 pacid=42778604 polypeptide=Potri.002G216900.1.p locus=Potri.002G216900 ID=Potri.002G216900.1.v4.1 annot-version=v4.1 ATGTCGGTGGCGAATCCAAACGCTGTCTCTGTGCCTCCATCCGATTACGACGTCGAGTTTCGTAGCTTATCAGACGACGCCTGGTACAGCGTTTGCACGG TTCTCGATGGCGAGAAACTCACTCTCAAGTACCAAAATTTCAGTGACGACGATGACTCCATTTTCGAGGTGAAGAATTTCAAAACTTTGGAGGAACTAGA GAGGTTGGAGGACCGGTTCCGCCCTATTTCTGCTCAATTGCAGGACAACGAGTGCCACAAAGTGGTCGGAGGTGTCGTTGTTTGCGCCTCGCATTCCTTC GATGGCTCTGACAACCGCTTTTACGACGCCGTAGTCGATGATGTGGTTCATAAGGAGCATTCATTTGAACAGGGAGGAGAAATGTGTTCGTGCACATTTA TCGTGATCATGCAGCATGGTCCAGTCGCTGGGTGTTTTGTTAACAAAACAATTGAAAGCCTCTGCCTTGTACAGTCCTATGCTTGCCTTGATCCTAATTT ACAGCTTTTCTTGAAGATGGTGAAGGAAAGACTTCAAAATGAACCTTGTGTACTTGAGAACAAGAAGTCAGCCACAAGCTTTACTAAATGGCTTAATCAG AATACTAAGTGTGCCAAGCAGTCTCCTTGTAAGAAACGTCCACCTGATGAGGCAAAGAGTAACGATCACAGTGATTGGTCTAGGGATGACAATGACCTCG GAGGCTGTAGCTCTGTGTTTTTGATTGACAATTTAGATAAAGATCTATCTCCTTCAACAATTGTGGAATTCATACACTCACGCACTTCACTCTCAGTTCA AGCATGTGTCTTCCCAAGCATGTCATCAGAGATGTACACACAGGGGGCCATTGTGTTGAATTGCAGAAAGAATCTTGAGAAATTGTCCAAATTTCTAGAT TGTCAAGACCATATTATCATGTCAAAGAGAGGAAGGCCGTGGGTGGTAACTGGGAATCTGTCTGGGTATGATTCATTTGCAGTGTCAATTCAAAACTTGA TGCATAAATATCAGGAGAATTGGCAGCATAAAAGTACCGGCCATGCTTTAAAAGTTGTTTGTCCTGGATCTGAGGAATACACGACTGCAAAGCAGCTGAG AGATCTATTCATGGAGTTCACTGAGCATCAACGGCGATTACACAAGAGGCTAGCGATGGAGGAGAGAAAGATCTTGCAGCCATCCCAAGTAGCATAG
AA sequence Show only first row Show all	>Potri.002G216900.1 pacid=42778604 polypeptide=Potri.002G216900.1.p locus=Potri.002G216900 ID=Potri.002G216900.1.v4.1 annot-version=v4.1 MSVANPNAVSVPPSDYDVEFRSLSDDAWYSVCTVLDGEKLTLKYQNFSDDDDSIFEVKNFKTLEELERLEDRFRPISAQLQDNECHKVVGGVVVCASHSF DGSDNRFYDAVVDDVVHKEHSFEQGGEMCSCTFIVIMQHGPVAGCFVNKTIESLCLVQSYACLDPNLQLFLKMVKERLQNEPCVLENKKSATSFTKWLNQ NTKCAKQSPCKKRPPDEAKSNDHSDWSRDDNDLGGCSSVFLIDNLDKDLSPSTIVEFIHSRTSLSVQACVFPSMSSEMYTQGAIVLNCRKNLEKLSKFLD CQDHIIMSKRGRPWVVTGNLSGYDSFAVSIQNLMHKYQENWQHKSTGHALKVVCPGSEEYTTAKQLRDLFMEFTEHQRRLHKRLAMEERKILQPSQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25330			unknown protein		Potri.002G216900 [exp]	0	1
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	2.82	0.8717
					Potri.009G036201 [exp]	4.58	0.8633
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	5.29	0.8629
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067800 [exp]	5.83	0.8239
					Potri.001G194901 [exp]	6.32	0.8493
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133600 [exp]	8.48	0.8368
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	9.74	0.8223
AT3G19540			Protein of unknown function (D...		Potri.009G092400 [exp]	10.81	0.7977
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027700 [exp]	11.18	0.8153
AT4G27610			unknown protein		Potri.013G076900 [exp]	11.74	0.8469

Compare expression of checked genes

Potri.002G216900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.