Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07660 600 / 0 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 103 / 1e-22 GIP1 GBF-interacting protein 1 (.1) AT1G55820 92 / 5e-19 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 87 / 3e-17 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT4G18150 79 / 9e-15 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 70 / 5e-12 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 70 / 5e-12 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 69 / 1e-11 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169900 [exp] 1248 / 0 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 294 / 5e-87 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 211 / 3e-57 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G170700 [exp] 135 / 2e-32 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.003G063300 [exp] 105 / 5e-23 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G353100 [exp] 88 / 1e-17 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 88 / 1e-17 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 75 / 2e-13 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036414 [exp] 877 / 0 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 861 / 0 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 93 / 7e-19 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10037658 [exp] 84 / 3e-16 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10004604 [exp] 83 / 7e-16 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 81 / 3e-15 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 75 / 2e-13 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 53 / 2e-08 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 56 / 1e-07 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 54 / 6e-07 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF06972 [poplar] [flax] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Potri.002G217000.1 pacid=42779712 polypeptide=Potri.002G217000.1.p locus=Potri.002G217000 ID=Potri.002G217000.1.v4.1 annot-version=v4.1 ATGAGCGGTGGTGGGGTTAGGGTTTCAATCCCGGGCAACGTGAGGAAGACGATCCAGAACATAAAGGAGATCACAGGCAATCACAGTGATGAGGAGATTT ATGCAATGCTCAAGGAGTGCTCTATGGATCCCAATGAAACTGCTCAAAAACTTCTCTATCAAGATCCATTTCACGAAGTCAAAAGGAAGCGTGACAGGAA AAAAGAGAACATGAACAATAGAGAGTCTGGAGATTCTCGATGGAGGTCTGGCATGCAGGGGCGGGGGAGTAGGGGTGGCATGCAGGGGCAGGGGAGCAGG GGTGGTCGGCCAAGCTTTTCTCCGCGTCATACATATCATGATACTGGTGGTGGAAGGAATTCTGCTGCTGGAAGGGACAATGGAACCAACCATGCTGCAG AGAAGGGCGCTGGCTCTTCTTTGTTAGCCTCCGAAGAGAAATATAAAGAAACTACTCCATCAGCAAGCTCCTCTGCAGTTGTGGCCAATGGTCCAACTGG TGTTGTTTCTGGAAACACTAGTGCAATGCTTGCCTCCAATTTACCTACAGGAAGCAATCAACATGAAGTGACTTCATCACCTATTGTTGGAAGGGAAGCA TACCACATTGATGTTGATAAAGCTCCTACTATTGCATTTGGAACTGGGGATGCGTGCAGGGAGTCCTTGCCAAGCTCTAACAACTCCTCCATGTCTGTGA TTCCAGCATCTTCTTCAAAAATTTGCTTCTCGTCCTCGGATCCTGTACTAAAGCTTTCTAATGATTCATGTCCCCCTGGTACGGTGGGTACAATTAAACG TGAAGTGGGGAACCATCAAACTGCGGGTGAATCAGCTTCCGAGATTGGTGTCCCTTTCATGCCAGGGAAGATGCCAAGCAAAAACCAAGGAGTTGGGAAG AACCAGCTCAGTGATTCTTCCCAACCTTCTTTTGCATCAATCCAGGGTGGTTCTTTCAGTAGCCGGCCTTCCTCTAACTACAGTAGCAGGTCTCAACTGA TAATAGGCTCTCAGAAAGTTGGCTCTAATATGGAGTGGAAACCAAAGGCAACAAACCCTAACGTAGCACAGGAGTCTGGAACAGCTGGTTTATCTGACAT TTCTAATATTCCACTTGAATCCAGTGGCCATTCACAGGCCTCCTCGGGTGTCCTTGATTCAGAAGAAGCAACTGCCAAACTGCAGAAGAAGCTGGAGGAG TTGCATCTTCCACAGCGTCAACATGTTATAATTCCACACCATATCCATGTTCCTGAATCTGAAAGAAACAAATTGAGTTTTGGAAGCTTTGATGCTAGTT TCGGAGTGACGTCAAGTTATGTTAGCGGGGCTGAGAGTAACAAGAGTTCTACACCCGTGTCTGAAACTTCTCAGGGTATTGAAGAACCTATGGAGGAACA AGCTGAAAGCAATCAAAATACACCGGTGACTGCTGAGGAGGGAATTTATCCTGATCATCCACAGTCGCCTTCACATGTACCTGGAAATTTATCAGCTGAG GGTGATGCATCATCCAACACAGTGCCTGATTATGAGTCTAAGCAGGAGGCTGCATTGTTGTCTGGAGGCCATCAGTACTCGGTGGTTCATACTTCTCCTG GCTACAGTTTTGGTCTTGTGCCTCCAATGTTGGGTAGTCAGATTATGCCATTTGAGAACTCAGAATCTCAAGCACGTGATGTTTCTCGCCTACCTAGCTT TGTGGTCCAGCAACCATTTGACCCTACAAGTTATTATGCCCAATTTTATCGTTCAAGTGCTGATGGTGATGGTCGTGTTTCTCCCTTTCCTGCGCCTGGA GTTGCTTCCAAATACAATGGGAATGTTGCAGTGTTGCCTCCACATACTTCACAGCCTCCCCAAGAGGGTGGGAATTCTTTAGTTTTATCCACTGCAGGTC CCACTCCTCTGGGGACCCAAGCTGCTGGGCTCATGCAAAGCTCCATAGCTATGACTCAGCAACCTGTCCCTGTCTTTCGTCCACCAACTGGGTTGCACAC ATCCCATTTCCCCCCAAACTACATCCCATATGGCCATTACATCTCCCCAATTTATGTGGCTCCAGGTATGTACCAGTTCTTAAGCAATGGTACATTCCTA CAGCAACCTCAAGCTGGCAGTGTGTATCCAGCACCACCATCTGCAGCAGCCACGGGGGTCAAATATTCACTTCCGCAATTCAAACCTGGAAGTAATACAG GAAATGCAACTCACATTGGGATGCCAAGTGGTTATGGACCATATGGTTCCTCTCCTGCTGGTTTTAATCCCAATTCTGCAGTGACAGGAGGAAACTCAAC CACAAATGATGATCTTGGTGCATCTCAGTTCAAGGAAAGTAATATCTACATTACCGGGCAGCAGAGTGAGGGTTCGGCTGTGTGGATCACTACTCCTGGC CGAGACATATCTAGCTTGCCAGCAAGTACCTTTTACAACCTTCCTCCTCAAGGTCAGCATGTGGCTTTTGGACCAACTCAGGCTTCCCATGGCACCTATA CCAATATCTATCACCCTGGGCAACCAGTAACTGCAGCAGCTGTTCACCCACTTCTGCAACAGTCTCAGGCCATGGGTGGAGCTGTTGATATGCTAGGACC TGCAGCCAGTGCTTACCAGCAGTCTCAACATCAACAGATCAACTGGCCTAGCAACTACTAA
AA sequence Show only first row Show all	>Potri.002G217000.1 pacid=42779712 polypeptide=Potri.002G217000.1.p locus=Potri.002G217000 ID=Potri.002G217000.1.v4.1 annot-version=v4.1 MSGGGVRVSIPGNVRKTIQNIKEITGNHSDEEIYAMLKECSMDPNETAQKLLYQDPFHEVKRKRDRKKENMNNRESGDSRWRSGMQGRGSRGGMQGQGSR GGRPSFSPRHTYHDTGGGRNSAAGRDNGTNHAAEKGAGSSLLASEEKYKETTPSASSSAVVANGPTGVVSGNTSAMLASNLPTGSNQHEVTSSPIVGREA YHIDVDKAPTIAFGTGDACRESLPSSNNSSMSVIPASSSKICFSSSDPVLKLSNDSCPPGTVGTIKREVGNHQTAGESASEIGVPFMPGKMPSKNQGVGK NQLSDSSQPSFASIQGGSFSSRPSSNYSSRSQLIIGSQKVGSNMEWKPKATNPNVAQESGTAGLSDISNIPLESSGHSQASSGVLDSEEATAKLQKKLEE LHLPQRQHVIIPHHIHVPESERNKLSFGSFDASFGVTSSYVSGAESNKSSTPVSETSQGIEEPMEEQAESNQNTPVTAEEGIYPDHPQSPSHVPGNLSAE GDASSNTVPDYESKQEAALLSGGHQYSVVHTSPGYSFGLVPPMLGSQIMPFENSESQARDVSRLPSFVVQQPFDPTSYYAQFYRSSADGDGRVSPFPAPG VASKYNGNVAVLPPHTSQPPQEGGNSLVLSTAGPTPLGTQAAGLMQSSIAMTQQPVPVFRPPTGLHTSHFPPNYIPYGHYISPIYVAPGMYQFLSNGTFL QQPQAGSVYPAPPSAAATGVKYSLPQFKPGSNTGNATHIGMPSGYGPYGSSPAGFNPNSAVTGGNSTTNDDLGASQFKESNIYITGQQSEGSAVWITTPG RDISSLPASTFYNLPPQGQHVAFGPTQASHGTYTNIYHPGQPVTAAAVHPLLQQSQAMGGAVDMLGPAASAYQQSQHQQINWPSNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	0	1
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	2.44	0.7693
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	5.65	0.7604
AT3G22430			unknown protein		Potri.009G147201 [exp]	6.32	0.6991
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	6.63	0.7558	CEF.2
AT5G43710			Glycosyl hydrolase family 47 p...		Potri.008G160900 [exp]	8.12	0.6986
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	11.48	0.7211
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	11.83	0.6681	Pt-GR1.2
AT5G54920			unknown protein		Potri.001G423200 [exp]	12.36	0.7040
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	12.72	0.7578
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.019G079300 [exp]	16.49	0.6439

Compare expression of checked genes

Potri.002G217000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.