Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170000 [exp] 194 / 3e-62 ND / Potri.008G186700 [exp] 74 / 5e-16 AT5G50090 41 / 1e-04 unknown protein Potri.010G046225 [exp] 74 / 1e-15 ND / Potri.003G179600 [exp] 60 / 8e-11 ND / Potri.002G242400 [exp] 60 / 3e-10 AT1G06980 45 / 9e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036859 [exp] 75 / 2e-16 AT1G06980 41 / 1e-04 unknown protein Lus10006211 [exp] 75 / 3e-16 AT1G06980 39 / 9e-04 unknown protein Lus10026092 [exp] 67 / 3e-13 ND 42 / 5e-05 Lus10002327 [exp] 66 / 4e-13 AT1G29195 47 / 1e-06 unknown protein Lus10025927 [exp] 66 / 8e-13 AT1G06980 43 / 4e-05 unknown protein Lus10038171 [exp] 63 / 5e-12 AT1G06980 46 / 2e-06 unknown protein Lus10009561 [exp] 54 / 1e-08 AT1G06980 44 / 1e-05 unknown protein Lus10020386 [exp] 54 / 2e-08 AT1G06980 44 / 3e-05 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.002G217100.1 pacid=42778241 polypeptide=Potri.002G217100.1.p locus=Potri.002G217100 ID=Potri.002G217100.1.v4.1 annot-version=v4.1 ATGCTCGAGAAGTTACTCAAAGCTCATAAGCTCTCACCTTTCGCACGCAGTGACCTCCCTAAGCCAGCAAACCCGACGACTCCTGAGAAGCTGGAGATTG CTTCCTCTGCCTTGCAGATTATCCATGCTGGAGGGAGAGTTGAATGCTATTATATGGCAATACCTGCCGCCAGGATCTTGGAGAAATACCCCTCTCATGC ATTAGCTAAGCCAGAGGTTTTCAGAAGGCCATGGAATTCAGTGGTCCGGCCAGAAAAAATCCTTACTCCAGGACATAAATTCTTGCTCGTTCCTCATCAT GCCGTGAGGAAGCTTCGACGAAAGATTGGAAAACCAAGTGAGGAATCGTCATCATCATCAGTTTCTCTTACTTCACAAGCTTCAAATGACGCCTGGACTG ACATGGTCTCTCGCCAAAACAATAATGATGTTTCGAGCAGATCATTCTTCTCAGAGAGTGACATTAGTACTGGTGTTTCAAGGGACTCGAGTTGTTCCTT CAGAAGCGCTTTAAGGAAGAAGACTGGTGTTAAAAAGTATGTAAGATTTGCAGGCATTGCTGTCAAGCACAAGGGAGGTCACAACTCTACTAATTCGGAG AAGAAAGGTAATAAGGTGGATCACGACACTTCCTTAAAGAGCTCGAGTACTACCGTTTCTCGATCTAACCGGCGAAATAGGAGACCTCGGAATTCTGCTG CATGGCGGCCATCACTTACAGTGATCAGCGAAAGCAAAGGCGACTGA
AA sequence Show only first row Show all	>Potri.002G217100.1 pacid=42778241 polypeptide=Potri.002G217100.1.p locus=Potri.002G217100 ID=Potri.002G217100.1.v4.1 annot-version=v4.1 MLEKLLKAHKLSPFARSDLPKPANPTTPEKLEIASSALQIIHAGGRVECYYMAIPAARILEKYPSHALAKPEVFRRPWNSVVRPEKILTPGHKFLLVPHH AVRKLRRKIGKPSEESSSSSVSLTSQASNDAWTDMVSRQNNNDVSSRSFFSESDISTGVSRDSSCSFRSALRKKTGVKKYVRFAGIAVKHKGGHNSTNSE KKGNKVDHDTSLKSSSTTVSRSNRRNRRPRNSAAWRPSLTVISESKGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.002G217100 [exp]	0	1
AT5G56790			Protein kinase superfamily pro...		Potri.001G035900 [exp]	14.49	0.9267
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	17.74	0.9299
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.006G134900 [exp]	22.97	0.9399
AT3G26610			Pectin lyase-like superfamily ...		Potri.008G188300 [exp]	23.97	0.9388
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.016G101100 [exp]	24.79	0.8930
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	29.46	0.9394
					Potri.014G082700 [exp]	32.55	0.8745
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Potri.001G347300 [exp]	36.41	0.9373
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.002G189300 [exp]	39.33	0.9359
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	42.04	0.9355	Pt-RD22.1

Compare expression of checked genes

Potri.002G217100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.