Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12780 320 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 318 / 6e-94 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 245 / 6e-71 Chaperone DnaJ-domain superfamily protein (.1) AT4G36520 227 / 5e-61 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 207 / 1e-54 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 134 / 4e-32 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 91 / 6e-19 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197600 [exp] 718 / 0 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 255 / 1e-74 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 246 / 2e-71 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 238 / 1e-64 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 230 / 5e-62 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 216 / 1e-57 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 210 / 2e-55 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 142 / 1e-34 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 133 / 1e-31 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012303 [exp] 362 / 4e-110 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016079 [exp] 355 / 3e-107 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 357 / 2e-103 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 327 / 1e-93 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10018854 [exp] 246 / 3e-70 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 235 / 3e-66 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10041769 [exp] 215 / 4e-57 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 189 / 1e-48 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 185 / 1e-47 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 177 / 5e-45 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G217200.7 pacid=42780049 polypeptide=Potri.002G217200.7.p locus=Potri.002G217200 ID=Potri.002G217200.7.v4.1 annot-version=v4.1 ATGGATGATTTCCCCGGTTTGTTAGCCCGCGACTTCGGGTTCAAACCCCAAGGCAAATCCGCACCCATGGCTCCACCCCGCAGCACAAACAGTAACAGTA CCAATTTTAACCTTGGATCCGGTGGTCCCGTTCACACACGATCCTCCTCCTCCCACAAATCCGCTCCTCTTTTCGACAATCAAGCCGGCACGGACGGTCT CTTGTTCAACGACGTCTTCGGTGGTCCTCCTAAGTATTCAGAATCACGCGGCGGAGCTTCCGCTACAGCATCGTCATTTGATTTTGACTCCATTTTCAAG GAACAGAATCCCAAATCGGCATCGCTGCCGATCTCTGATAAGCCTGTTTACGATGATGATATTTTTGATGGATTGCCTGGCTTGAAGAGTTCGTCTTCTG GCGGTGGTTCTGCGTCGGCCCCTAAGTTTGATGATGCGTTTGGTTCGGTCAGTTCACCCCCGAAGCAGCAGCATCGAAGGCCAGTGCGAGATAGTTCACC GTTTGATGATCTGCTGGGGAATTTAGGTAAGAAGGAGGCGGAACCAAAGAGAGAGAGTGGTAGAGTGGATAAGGATTCGACGGCTTTTGATGATTTACTT CCTGGTTTTGGCCGCATTAGCTCCCATACGGTTAACCGTTCAACTTCCGAGTCGGGTCTGTTCCAAAAGCAATCTTTAAATTCAGCCAGGTCAGTTCCTG GTGTGATGGAAGATCCCTTTGTAGTACTAGAGTCAACGTCAAGCCATGCAACTTCATCATCAGGGTTGTTCACAGAACCTTTGGGAGAAATTAGTAAAAC CGGTAACCCTGGAAACACTAAGGTTGATAGTTCATCTGTAGAGAGGGGAGTATTTGAAGATCTAGATCACCTCGATGATCTTGGGAAATCTGTTCCGTAC AAGAGATGGGAGAATAGGAGTCCTTTAAGAACAGGACCAAGCACGGGTGGTTCATATTCCTCTGCGAGTCAAGAATCAGTTGACACATATCCTGTGGAGA ATGCCGGGGGCCGCTCGCAGAAGAAAACAACTGATGATTATCACGAATCTCATGAAGCCATATTCAATATGCCTACTGCTTCAACAGATTTTCATAGATC TTTTGGTCAAAATGCCTCTCCTCCTTCATATGTGGATGTCAATGCTAATGAGATAAATTCTTCTCCCAGATCTGAAGAGGTCTCTGAATCATCAGATGAT GTATGGCTTTCTGTGTCTGAAATCCCTCTTTTTACTCAACCCACAAGCGCAACACCACCTTCTAGGCCCCCACCTCCAAGACCACCGCGGATATCAAAGT CGGAGATAGGTTCCTTTTCTTCTACAAACTCTAGAAAGAAGGTCAATGAGTATCCTTCTTTCCAAAATTCCACTTCATACTCTCAAAGTCCTAGATCAGA TCGTGCAGCAAGGAATTCAGTTACTTCTCAAATTGATGAACTTGAGGACTTTGTCACGGGAAGGACTCAAAACAATAATAATGAATTTGCAGATGTTCTA CCTGTTGACGATGTGGATAAAACTTCCTCTGCTGCTGCTTCTGCTGCTATGAAGGAGGTCATGGATAAAGCAGAGGCTAAAATCAGGCAAATGAGGGAGA GGGAATATCTAAAGGCTGCTAGAAATAAAGAAGCTGGTCAGCTGGATAAAGATATGCTAGATGCTCAGCAGAGGGAATTAAAAGAAAGAGGAGAGAGATT TGATCGTGAGAGACAACAGAGGGAAAAGGAGGAGGAAGAGAGAGAGCATAGAAGATTTGAGAAAGAGAGGGAGAGAACTCGTGAAATTGAGAGGGAAAGG GGGGAAAAAGAAAGAGAGCAAAGGAGGCTTGAAAGAGAGAGGGGGCGAGCAAGGGAGATTGAGAGAGAAAGGGACAAGGCCAGACAAGTAGTGGAAAGGG CAACTAGAGAGGCACGTGAAAGAGCAGCTACTGAAGCTCTCCTGAAAGCTGAAAGGGCTGCTGTGGAGAAAGCAGCTGCTGAAGCTCGAGAAAGAGCAGA AAGGGCTGCTGTGCAGAGAGCACAAGCTGAAGCCCGTGAAAGGGCAGCAGCAGGGGCAAAAGAAAGAGCAGAAAGGGCTGCTGCAGAAGTCCGGGAAAGG GCAAATGCTGAGGCTAGGGAGAGGGAAGCCCGGGAAAGAGCTGCTTTTGCAAGGGCTGAAGCTGATGCTCGACTCAGAGCAGAACGAGCTGCTGCGGAAA GAGCTGCTGCAGAGGCTCGAGAAAGGGCTGCTTCTGCTGCCATGGCAAATCATCAAAAGAATGAAAATGATCTTGAATCATTCTTCAGTACTCGAGCAAA CAGTGCACCAAGACCTAGGGCAAACACTTCAGATCCTTTCTCTGATAGCCAGAACAATCGAGGGTCTGAAGCAGTTAGGAAGACGTCTGTTGGAGCTACA TCTAGCATGAGGAAAGCATCTTCAGCAATAAATATTGTTGATGATTTAACTTCGCTTTTTGGAGGAGGTGCTGGATCATCTGGAGAATTCCAAGAGGTTG AAGGGGAAACTGAAGAAAGACGAAAAGCCCGATTGGAACGCCATCAAAGGACTCAGGAGCGTGCGGCAAAAGCACTGGCCGAGAAGAATCAACGCGACCT TCAAGCTCAGAGAGAACAAGCAGAGAGACATAGGATTGCTGAAACATTGGATGTTGAGATAAAGCGTTGGGCTGCAGGAAAAGAGGGGAATCTCCGTGCT CTGCTATCAACACTCCAATATGTGCTGTGGCCTGAATGTGGATGGCAGCCTGTCTCTTTGACCGATTTGATTACTGCTGCTGCAGTTAAAAAAGTTTATA GAAAAGCAACCTTAAGCATTCATCCTGATAAAGTGCAACAAAAAGGCGCCAATCTTCAACAAAAATATGTTGCTGAGAAGGTGTTTGACTTACTTAAGGA AGCGTGGAACAAGTTCAATTCTGAAGAGCTTTTCTGA
AA sequence Show only first row Show all	>Potri.002G217200.7 pacid=42780049 polypeptide=Potri.002G217200.7.p locus=Potri.002G217200 ID=Potri.002G217200.7.v4.1 annot-version=v4.1 MDDFPGLLARDFGFKPQGKSAPMAPPRSTNSNSTNFNLGSGGPVHTRSSSSHKSAPLFDNQAGTDGLLFNDVFGGPPKYSESRGGASATASSFDFDSIFK EQNPKSASLPISDKPVYDDDIFDGLPGLKSSSSGGGSASAPKFDDAFGSVSSPPKQQHRRPVRDSSPFDDLLGNLGKKEAEPKRESGRVDKDSTAFDDLL PGFGRISSHTVNRSTSESGLFQKQSLNSARSVPGVMEDPFVVLESTSSHATSSSGLFTEPLGEISKTGNPGNTKVDSSSVERGVFEDLDHLDDLGKSVPY KRWENRSPLRTGPSTGGSYSSASQESVDTYPVENAGGRSQKKTTDDYHESHEAIFNMPTASTDFHRSFGQNASPPSYVDVNANEINSSPRSEEVSESSDD VWLSVSEIPLFTQPTSATPPSRPPPPRPPRISKSEIGSFSSTNSRKKVNEYPSFQNSTSYSQSPRSDRAARNSVTSQIDELEDFVTGRTQNNNNEFADVL PVDDVDKTSSAAASAAMKEVMDKAEAKIRQMREREYLKAARNKEAGQLDKDMLDAQQRELKERGERFDRERQQREKEEEEREHRRFEKERERTREIERER GEKEREQRRLERERGRAREIERERDKARQVVERATREARERAATEALLKAERAAVEKAAAEARERAERAAVQRAQAEARERAAAGAKERAERAAAEVRER ANAEAREREARERAAFARAEADARLRAERAAAERAAAEARERAASAAMANHQKNENDLESFFSTRANSAPRPRANTSDPFSDSQNNRGSEAVRKTSVGAT SSMRKASSAINIVDDLTSLFGGGAGSSGEFQEVEGETEERRKARLERHQRTQERAAKALAEKNQRDLQAQREQAERHRIAETLDVEIKRWAAGKEGNLRA LLSTLQYVLWPECGWQPVSLTDLITAAAVKKVYRKATLSIHPDKVQQKGANLQQKYVAEKVFDLLKEAWNKFNSEELF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	0	1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	1.00	0.9198
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	1.41	0.8363
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	1.73	0.8362
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	2.00	0.8361
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	2.44	0.8159
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.005G156900 [exp]	3.00	0.7755
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	3.16	0.8286
AT3G58050			unknown protein		Potri.016G060200 [exp]	4.00	0.8049
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	5.29	0.8077
AT3G58050			unknown protein		Potri.006G194500 [exp]	12.64	0.7664

Compare expression of checked genes

Potri.002G217200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.