Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04039 171 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172800 [exp] 267 / 3e-92 AT2G04039 169 / 3e-53 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012298 [exp] 129 / 5e-35 AT5G48330 525 / 0.0 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10016075 [exp] 103 / 7e-26 AT5G48330 447 / 1e-152 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11210 [poplar] [flax] DUF2996 Protein of unknown function (DUF2996)
Representative CDS sequence Show only first row Show all	>Potri.002G217400.2 pacid=42779144 polypeptide=Potri.002G217400.2.p locus=Potri.002G217400 ID=Potri.002G217400.2.v4.1 annot-version=v4.1 ATGGCAACAAGAGGTGGAGCAATGGGAGTTTCAAGCTTCCCATCATCACCTTCATGTTTCAGGAAGAATGGCAGGGCCACCTGCTCTACTACACTCCATT TGCAGATGGCTAGCAAGTCAGTAATACCGCGTAGAAGAATCACGTTCTCAGCTGTGCAAGAATCGTCTGCTTCCACTGTTGAAAAGAAGGCACCGACAAA GCCCAAAAAAAGTCCTGCTAAGCCACTTTCTCAGTTGATGGAGGAGGATGTGATCCCTTCTTTGAAAGCAACTCTTGAGGCTCAAGATCATATCACTGAA CTCGAGCTATCTTTCGAAGACAAAAGATTGGAAGGCTCCTTCCTAAAGAAGGGCACTCCTTATTCATTTTGGGCCTTCTTCCCTGACGGAGTCCTCACAG GTCCAAAAGGGTTTTCTCTATCATCCTACGGTTCAGGGGTCAGCACAGTTGAGCCTTTTCTGATCGATGAGAAGAAAATTACTGAAAAACACATCGTTTT TTGGGTGGAAAAGCGCTTGGCAGCTCAAGGAATCATTCCTGTGTGGCGAGGATAG
AA sequence Show only first row Show all	>Potri.002G217400.2 pacid=42779144 polypeptide=Potri.002G217400.2.p locus=Potri.002G217400 ID=Potri.002G217400.2.v4.1 annot-version=v4.1 MATRGGAMGVSSFPSSPSCFRKNGRATCSTTLHLQMASKSVIPRRRITFSAVQESSASTVEKKAPTKPKKSPAKPLSQLMEEDVIPSLKATLEAQDHITE LELSFEDKRLEGSFLKKGTPYSFWAFFPDGVLTGPKGFSLSSYGSGVSTVEPFLIDEKKITEKHIVFWVEKRLAAQGIIPVWRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04039			unknown protein		Potri.002G217400 [exp]	0	1
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048650 [exp]	1.41	0.9496
					Potri.002G000452 [exp]	7.34	0.8506
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Potri.015G143200 [exp]	10.09	0.8950
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	11.22	0.9317
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	12.84	0.9071
AT1G18520		TET11	tetraspanin11 (.1)		Potri.015G055700 [exp]	14.14	0.8350
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	16.24	0.9297
AT2G21210			SAUR-like auxin-responsive pro...		Potri.009G127500 [exp]	31.46	0.8839
AT1G07050			CCT motif family protein (.1)		Potri.009G077100 [exp]	38.72	0.7977
AT5G28780			PIF1 helicase (.1)		Potri.007G048501 [exp]	41.37	0.7918

Compare expression of checked genes

Potri.002G217400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.