Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07890 694 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 182 / 2e-50 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 171 / 1e-46 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 170 / 1e-46 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 145 / 5e-40 PAM1 plant adhesion molecule 1 (.1) AT3G02460 142 / 1e-38 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 69 / 2e-12 RabGAP/TBC domain-containing protein (.1.2) AT2G30710 68 / 3e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 61 / 7e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 60 / 1e-09 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163400 [exp] 769 / 0 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G133400 [exp] 187 / 2e-52 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.010G215000 [exp] 166 / 3e-45 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 166 / 4e-45 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.004G106700 [exp] 149 / 2e-41 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 144 / 3e-39 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 77 / 4e-15 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 75 / 3e-14 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 67 / 6e-12 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006410 [exp] 692 / 0 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 688 / 0 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10014020 [exp] 182 / 2e-50 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10041425 [exp] 169 / 6e-46 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 164 / 3e-44 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 160 / 8e-43 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10003047 [exp] 142 / 2e-38 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 140 / 9e-38 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036500 [exp] 88 / 9e-19 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 77 / 5e-15 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.002G218100.1 pacid=42776941 polypeptide=Potri.002G218100.1.p locus=Potri.002G218100 ID=Potri.002G218100.1.v4.1 annot-version=v4.1 ATGTACCATACACATAGCAAAAGAGAATTTTCCATAGGATTCCAACCTCAAATGCAAATATTGAGGCCAAGCATCCATTCAAGAAGGGCAAACTTAATGG TCAAATTCCAAGACCTTTATGGGTTCGCTGTGGAGGGCAATGTCGATGATGTTAATATATTGAATGAGGTTAGAGAGAAAGTGAGGCAACAGGGGAGGGT TTGGTGGGCTTTGGAAGCTAGTAAAGGTGCTAATTGGTATCTGCTGCCACATGTTTCTTCATTAACTGAAGGAATTGCACTCAAATCTTCTCTCAAATTG TCAACTTTAACCAATGCAATCACTTTGAAGAGGCTTATAAGGAAGGGGATACCCCCTGTGCTTAGGCCTAAGGTTTGGTTTTCGCTCTCTGGTGCTGCAA AGAAGAAGTCTACGGTGCCTGAGAGTTACTACAATGATTTGACTAAGGCTGTTGAAGGGAAGGTCACAGCAGCTACAAAGCAGATTGATCATGACCTGCC ACGGACCTTTCCTGGTCATCCATGGTTGGACACTCAAGAGGGCCATGCTACACTCCGACGAGTTCTTGTTGGATATTCTTTTCGTGATTCAGATGTTGGC TATTGCCAGGGCTTAAATTATGTCGCAGCACTGTTGTTACTTGTGATGAAAACAGAGGAAGATGCTTTTTGGATGCTGGCAGTTCTTCTGGAGAATGTCT TAGTGAATGACTGCTACACAAATAATTTGTCAGGGTGCCATGTTGAACAAAGAGTTTTCCAGGATTTGCTTGTTAAAAAGTGCCCAAGAATAGCTGCTCA TTTGGAAGAACTAGAGTTTGATGTCTCCCTTGTTGCCACTGAATGGTTCCTATGCCTATTCTCTAAGAGCTTGCCTTCAGAGACAACTCTGCGGGTGTGG GATGTCCTCTTCTATGAGGGAGCAAAGGTTCTGTTTCATGTAGCTTTGGCTATTTTCAAGATGAAGGAAGAGGAGTTGCTTCTAACTCACCATGTTGGTG ATGTTATTAACATATTACAGAAAACAACACATCACCTCTTTGATCCTGATGAACTATTGACGGTGGCATTTGATAAGATAGGTTCTATGACAACCAACAC TATATCAAAGGAAAGGAAGAAGCAGGAACCAGCAGTAATGGCAGAGCTGGATCAAAGATTGAGAAGACTAAACTCTGTCAAAATGGATGATGACAAATAG
AA sequence Show only first row Show all	>Potri.002G218100.1 pacid=42776941 polypeptide=Potri.002G218100.1.p locus=Potri.002G218100 ID=Potri.002G218100.1.v4.1 annot-version=v4.1 MYHTHSKREFSIGFQPQMQILRPSIHSRRANLMVKFQDLYGFAVEGNVDDVNILNEVREKVRQQGRVWWALEASKGANWYLLPHVSSLTEGIALKSSLKL STLTNAITLKRLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTAATKQIDHDLPRTFPGHPWLDTQEGHATLRRVLVGYSFRDSDVG YCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFQDLLVKKCPRIAAHLEELEFDVSLVATEWFLCLFSKSLPSETTLRVW DVLFYEGAKVLFHVALAIFKMKEEELLLTHHVGDVINILQKTTHHLFDPDELLTVAFDKIGSMTTNTISKERKKQEPAVMAELDQRLRRLNSVKMDDDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Potri.002G218100 [exp]	0	1
AT1G71970			unknown protein		Potri.013G111700 [exp]	7.93	0.7916
AT3G45850			P-loop containing nucleoside t...		Potri.016G082400 [exp]	8.94	0.7936
AT3G56750			unknown protein		Potri.006G040400 [exp]	14.49	0.8200
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.010G167300 [exp]	15.23	0.7346
AT1G69080			Adenine nucleotide alpha hydro...		Potri.010G140200 [exp]	19.79	0.7804
AT3G21620			ERD (early-responsive to dehyd...		Potri.002G226800 [exp]	21.77	0.8036
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G086400 [exp]	23.06	0.7730	WRKY13.1
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	25.69	0.7902	PIN4,Pt-PIN6.2
AT2G34060			Peroxidase superfamily protein...		Potri.011G062300 [exp]	32.29	0.7949
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	36.00	0.7839	Pt-RAB11.12

Compare expression of checked genes

Potri.002G218100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.