Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44310 135 / 7e-42 Calcium-binding EF-hand family protein (.1) AT1G54530 60 / 3e-12 Calcium-binding EF hand family protein (.1) AT4G38810 49 / 1e-07 Calcium-binding EF-hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G218300 [exp] 276 / 2e-97 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 272 / 5e-96 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218800 [exp] 272 / 7e-96 AT2G44310 137 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G219000 [exp] 272 / 7e-96 AT2G44310 137 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 271 / 1e-95 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 270 / 3e-95 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218725 [exp] 270 / 4e-95 AT2G44310 135 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.014G161200 [exp] 250 / 4e-87 AT2G44310 143 / 1e-44 Calcium-binding EF-hand family protein (.1) Potri.001G231100 [exp] 134 / 3e-41 AT2G44310 221 / 2e-75 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035578 [exp] 129 / 4e-39 AT2G44310 182 / 3e-60 Calcium-binding EF-hand family protein (.1) Lus10008649 [exp] 123 / 8e-37 AT2G44310 177 / 2e-58 Calcium-binding EF-hand family protein (.1) Lus10009192 [exp] 79 / 1e-19 AT2G44310 94 / 1e-25 Calcium-binding EF-hand family protein (.1) Lus10026291 [exp] 55 / 2e-09 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10007567 [exp] 50 / 9e-08 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 41 / 0.0001 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2) Lus10042380 [exp] 41 / 0.0001 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.002G218201.1 pacid=42778420 polypeptide=Potri.002G218201.1.p locus=Potri.002G218201 ID=Potri.002G218201.1.v4.1 annot-version=v4.1 ATGAGTGTGGAGATTTTGGATGGTGCCACCATTGTCAACTTTCTGGAGGACGAGGAAGCATTCAGCGCGCAAATATGTGACCGCTTCGCCCACCTTGATT CAGACCATGATGGCCGGCTTTCCTACGGGGAAATGTTGAAGGAGCTGCAGTGTTTGAGGTTATTGGAAACCCACTTCGGCGTAGATGTGGAAACAGACCC GGATGAGCTTGCTCTCGTCTATGGTTCTCTTTTTGTCCAATTTGATCATGACTTGAATGGGACAGTGGACTTAGAAGAGTTCAAGTCAGAGACCAAGCAA ATGATGCTAGTCATGGCCAGTGGTATGGGTTTCTTGCCTGTTCAGATGGTACTGGAAGAAGACAGTTTCCTGAAGAAGGCTGTGGAGTGGGAATCTGCTA AACTCGTTGCCTGA
AA sequence Show only first row Show all	>Potri.002G218201.1 pacid=42778420 polypeptide=Potri.002G218201.1.p locus=Potri.002G218201 ID=Potri.002G218201.1.v4.1 annot-version=v4.1 MSVEILDGATIVNFLEDEEAFSAQICDRFAHLDSDHDGRLSYGEMLKELQCLRLLETHFGVDVETDPDELALVYGSLFVQFDHDLNGTVDLEEFKSETKQ MMLVMASGMGFLPVQMVLEEDSFLKKAVEWESAKLVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218201 [exp]	0	1
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218800 [exp]	1.73	0.9943
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218700 [exp]	2.00	0.9936
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218300 [exp]	2.44	0.9931
					Potri.011G126100 [exp]	3.46	0.9877
AT2G44310			Calcium-binding EF-hand family...		Potri.002G219000 [exp]	4.47	0.9871
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	4.58	0.9805
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218750 [exp]	5.47	0.9857
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.006G001301 [exp]	6.92	0.9780
AT1G03220			Eukaryotic aspartyl protease f...		Potri.019G065100 [exp]	7.74	0.9590
AT5G25940			early nodulin-related (.1)		Potri.009G143800 [exp]	7.93	0.9414

Compare expression of checked genes

Potri.002G218201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.