Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04540 640 / 0 Beta-ketoacyl synthase (.1) AT1G74960 210 / 1e-61 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT5G46290 207 / 2e-61 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138000 [exp] 227 / 6e-68 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.001G088700 [exp] 216 / 2e-64 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 215 / 2e-64 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 214 / 7e-64 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.018G062900 [exp] 212 / 3e-62 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.003G142000 [exp] 210 / 5e-62 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014622 [exp] 676 / 0 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 659 / 0 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1) Lus10034886 [exp] 224 / 1e-66 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10025390 [exp] 214 / 8e-64 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10040883 [exp] 213 / 1e-63 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 209 / 4e-61 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 206 / 1e-60 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 201 / 3e-60 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10033422 [exp] 197 / 1e-57 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10015267 [exp] 191 / 1e-52 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00109 [poplar] [flax] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02801 [poplar] [flax] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G219500.1 pacid=42779912 polypeptide=Potri.002G219500.1.p locus=Potri.002G219500 ID=Potri.002G219500.1.v4.1 annot-version=v4.1 ATGGCCAGCTCTTCTCGTTGGCGTCGATTATTATCATCATCTCCCTTTCGCTACCAACTGACTCGTCGTCACTTATCTTCTTCCTTTGGCCCTCCTCCAC CAGTCACTCCTCGCCGAGTAGTCGTCACCGGTATAGGCATGGTGACCCCTCTTGGTTGCGGAGTGCAAACGACGTGGAAGCGCTTGATAGAGGGAGAATG TGGTGTTCGGGCAATAACACCAGAGGATCTCAAAATGAACTCTTCTTTCGATACAGAGACTCAGCTGTACACTTTTGATCAGCTTACCTCTAAAGTTGCT GCTGTCGTTCCTTGCGGCACCAAAACTGGCGAATTCAATGCGGATTTATGGCTTAATTCTAAGGAGCATCGATCAGTTTCAAGGTTTATAGGCTATGCGC TGTGTGCTGCTGATGAAGCTCTTAAAGATGCAAAATGGGCGCCCACTGAGCAGGAACAGAAGGAAAGAACGGGTGTCTCTATTGGTGGGGGGATTGGAAG CATAACTGATGTGCTGGAAGCCTCGCAACTGATTTGTGAGAAGCGACTTCGTCGGCTTAGTCCATTTTTCATCCCACGGATATTGATCAACATGGCATCT GGTCATGTGAGCATGAAATATGGATTCCAGGGACCAAACCATGCTGCTGTGACAGCTTGTGCTACTGGAGCACATTCTATTGGCGATGCTGCAAGGATGA TTCAATTTGGGGATTCAAACGTTATGGTGGCTGGAGGGACAGAGTCCAGCATAGATGCTTTATCTATAGCAGGATTTTGTAGATCAAGGGCATTAACCAC GAAGCACAATTCCATGCCTCTAGAAGCTTCTCGACCTTTTGATTGTGATCGGGATGGATTTGTCATAGGTGAAGGTTCTGGAGTCTTGGTATTAGAAGAA CTTGAGCATGCAAAAGAACGAGGAGCAAAAATTTATGCAGAGATTCGCGGCTACGGGATGTCAGGTGATGCATATCACATTACTCAACCACATAATGATG GAAGGGGAGCTGTTCTGGCAATGACACGTGCCTTGAAACAGTCTGGTCTTCATCCCAATCAAGTGGATTACATAAATGCCCATGCTACATCTACACCTTT GGGTGATGCTGTAGAAGCCATTGCCATCAAAACTGTGTTCTCTGAACATGCAACATCAGGTGCTTTGGCATTCTCTTCCACAAAGGGTGCCATTGGCCAT CTACTAGGAGCTGCTGGTGCTGTTGAAGCCATATTTGCAATTTTAGCTGTGCATCATGGAATTGCACCATTGACTCTTAACCTCAATAAACCAGATCCCC TCTTCAAAGACAATTTTATGCCATTGACTGCATCGAAAGAGATGCCGGTAAGAGCAGCTTTGTCGAATTCTTTTGGCTTCGGAGGAACAAATGCATCTCT ACTTTTCACCTCAGTGTAA
AA sequence Show only first row Show all	>Potri.002G219500.1 pacid=42779912 polypeptide=Potri.002G219500.1.p locus=Potri.002G219500 ID=Potri.002G219500.1.v4.1 annot-version=v4.1 MASSSRWRRLLSSSPFRYQLTRRHLSSSFGPPPPVTPRRVVVTGIGMVTPLGCGVQTTWKRLIEGECGVRAITPEDLKMNSSFDTETQLYTFDQLTSKVA AVVPCGTKTGEFNADLWLNSKEHRSVSRFIGYALCAADEALKDAKWAPTEQEQKERTGVSIGGGIGSITDVLEASQLICEKRLRRLSPFFIPRILINMAS GHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSNVMVAGGTESSIDALSIAGFCRSRALTTKHNSMPLEASRPFDCDRDGFVIGEGSGVLVLEE LEHAKERGAKIYAEIRGYGMSGDAYHITQPHNDGRGAVLAMTRALKQSGLHPNQVDYINAHATSTPLGDAVEAIAIKTVFSEHATSGALAFSSTKGAIGH LLGAAGAVEAIFAILAVHHGIAPLTLNLNKPDPLFKDNFMPLTASKEMPVRAALSNSFGFGGTNASLLFTSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04540			Beta-ketoacyl synthase (.1)		Potri.002G219500 [exp]	0	1
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	4.79	0.8219
AT5G24500			unknown protein		Potri.012G021300 [exp]	8.66	0.7535
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Potri.007G059100 [exp]	13.03	0.7895
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	20.00	0.7812
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	25.69	0.7891
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.008G222700 [exp]	26.26	0.7499
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Potri.004G133600 [exp]	27.85	0.7760
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	33.52	0.7819
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	37.22	0.7800
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	39.42	0.7805

Compare expression of checked genes

Potri.002G219500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.