Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PLIN-GEN.22
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 526 / 0 BGLU17 beta glucosidase 17 (.1.2) AT3G60120 524 / 0 BGLU27 beta glucosidase 27 (.1) AT3G60130 522 / 0 BGLU16 beta glucosidase 16 (.1.2.3) AT5G42260 520 / 0 BGLU12 beta glucosidase 12 (.1) AT5G44640 518 / 0 BGLU13 beta glucosidase 13 (.1) AT2G44450 516 / 2e-180 BGLU15 beta glucosidase 15 (.1) AT3G60140 517 / 1e-179 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24550 508 / 8e-177 BGLU32 beta glucosidase 32 (.1) AT1G26560 504 / 7e-176 BGLU40 beta glucosidase 40 (.1) AT2G44470 498 / 5e-172 BGLU29 beta glucosidase 29 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G223800 [exp] 1053 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223716 [exp] 1049 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223700 [exp] 1049 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G224000 [exp] 1049 / 0 AT3G60120 526 / 0.0 beta glucosidase 27 (.1) Potri.001G223708 [exp] 1047 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222800 [exp] 1047 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223712 [exp] 1047 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223720 [exp] 1047 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223704 [exp] 1046 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031235 [exp] 558 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 557 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 550 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 542 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 532 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 524 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 517 / 0 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 511 / 5e-178 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 511 / 8e-178 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10036885 [exp] 497 / 5e-173 AT1G26560 778 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.002G219600.2 pacid=42779396 polypeptide=Potri.002G219600.2.p locus=Potri.002G219600 ID=Potri.002G219600.2.v4.1 annot-version=v4.1 ATGGGAAGTATTGCCCAGTTGAGTCGTAATTCTTTCCCAGATGGTTTCGTTTTTGGATCTTCTTCGTCAGCTTACCAGTTTGAAGGTGAAACAAACAGGA GAGGTAAAGGGCCGAATATATGGGACACCTTCATCGAGGAGCATCCAGAGAGGATAAGTGACCATAGCAATGCAAAGGTGGCAGTTGATTTCTATAATCG CTATAAGGAAGATGTGCAAAGAATGAGGGGAATGGGAATGGATGCTTTCAGATTCTCTATTTCTTGGTCTAGGGTATTACCACATGGCAGACTAAGTGCT GGAATAAACGAAGAAGGGATCCAGTTTTACAACAATCTCATCGATGAGCTCATAAAAAATGGTATACAGCCTTATGTAACTCTCTTTCATTGGGACACTC CACAAGCAATTGAGGACAAATATGGTGGTTTCTTGAGCCCTAATATTTTAAACGATTTCCGAGACTTTGTGGAGCTTTGCTTTCAAAGATTTGGAGACCG AGTGAAGCACTGGATCACTTTAAATGAGCCTTTTATGTTTAGTGTCAATGGTTATGACACGGGCACATTCGCACCCGGCAGAATTTCAACTTTGGAGAAT TATCCAGGCCAACCCAAAATCTCTGGCGCCACCGAGGTTTACATTGTAACCCATCATCTATTGCTTGCTCATGCAACGGCTGTGAAAGTATACAAGGAAA AGTATCAGACGTGTCAAGGAGGTAAAATTGGGATAACCCTCGTTTCTCATTGGTTTGAACCTTACTCAACTAGTGAAAGTGATCGGATGGCAACTGAACG AAGCCTTGATTTTATGCTTGGATGGTACATGGATCCTCTAACTAAAGGTGACTATCCACAGAATATGCACGACTACGTTGGAGGAAGATTGCCTAGATTC AGCGAGGAGGAATCCAAGATGCTGAGAGGATCTTATGACTTTATTGGGGTCAATTACTACACTACATACTATGCTCAGAATGTTGAGGATGTTAACTATA AAACTATTGGGTTTATGGAAGATGCTCGTGTTAACTGGCCAGGGGAGAGAAATGGAATACCAATTGGCCCACAGGCGGGTTCAAGTTGGCTTTATATTTA TCCCGAAGGTATTCGTCATCTCTTGAATTACATAAAGGACGCGTATGAAAATCCAACAATATATATCACTGAAAATGGAGTTGATGACGTGAATTCCTCG TCATTAGAGGAAGCCCTCAATGATGCCATAAGAGAGCAATATTATAAAGACATTTTCCACAATGTTCTGAAATCTATCAATGGCCATGGTGTCGATGTCA AGGGGTTTTTTGCTTGGTCATTCTTGGATGATTTTGAATGGGGATCCGGTTATAGTTCGAGGTTTGGTCTCTTCTACATTGACTACGAAAACAACTTGAA ACGATATGCCAAAAATTCTGTGAAGTGGTTTAAGCAATTTCTGAAGAAGGACGAGAGTACTCAACTCAACGATAGCATAAAATCAAAATCTCGAATGGAG GAAGGATCAGCTCGTAGCCGTAAGAAGTCGAGAATTGAATAA
AA sequence Show only first row Show all	>Potri.002G219600.2 pacid=42779396 polypeptide=Potri.002G219600.2.p locus=Potri.002G219600 ID=Potri.002G219600.2.v4.1 annot-version=v4.1 MGSIAQLSRNSFPDGFVFGSSSSAYQFEGETNRRGKGPNIWDTFIEEHPERISDHSNAKVAVDFYNRYKEDVQRMRGMGMDAFRFSISWSRVLPHGRLSA GINEEGIQFYNNLIDELIKNGIQPYVTLFHWDTPQAIEDKYGGFLSPNILNDFRDFVELCFQRFGDRVKHWITLNEPFMFSVNGYDTGTFAPGRISTLEN YPGQPKISGATEVYIVTHHLLLAHATAVKVYKEKYQTCQGGKIGITLVSHWFEPYSTSESDRMATERSLDFMLGWYMDPLTKGDYPQNMHDYVGGRLPRF SEEESKMLRGSYDFIGVNYYTTYYAQNVEDVNYKTIGFMEDARVNWPGERNGIPIGPQAGSSWLYIYPEGIRHLLNYIKDAYENPTIYITENGVDDVNSS SLEEALNDAIREQYYKDIFHNVLKSINGHGVDVKGFFAWSFLDDFEWGSGYSSRFGLFYIDYENNLKRYAKNSVKWFKQFLKKDESTQLNDSIKSKSRME EGSARSRKKSRIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.002G219600 [exp]	0	1	PLIN-GEN.22
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G222800 [exp]	14.21	0.9633
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037200 [exp]	18.92	0.9591
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037401 [exp]	20.12	0.9431
					Potri.014G013000 [exp]	20.85	0.9582
AT2G38600			HAD superfamily, subfamily III...		Potri.006G110900 [exp]	25.15	0.9081
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G225800 [exp]	30.06	0.9544
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223700 [exp]	37.70	0.9536
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223720 [exp]	41.58	0.9523
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.007G059401 [exp]	43.63	0.9522
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223724 [exp]	52.64	0.9507

Compare expression of checked genes

Potri.002G219600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.