Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03310 919 / 0 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT4G09020 359 / 2e-111 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 303 / 3e-90 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT5G04360 46 / 0.0001 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100900 [exp] 369 / 1e-114 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.006G070800 [exp] 320 / 9e-96 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 310 / 2e-92 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.001G359200 [exp] 44 / 0.0007 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000661 [exp] 924 / 0 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10027999 [exp] 904 / 0 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10021586 [exp] 321 / 1e-96 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 305 / 8e-91 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10017150 [exp] 227 / 5e-65 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10038675 [exp] 57 / 5e-08 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10017149 [exp] 51 / 8e-07 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10000912 [exp] 45 / 0.0004 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.002G219900.2 pacid=42777342 polypeptide=Potri.002G219900.2.p locus=Potri.002G219900 ID=Potri.002G219900.2.v4.1 annot-version=v4.1 ATGCATCTCTTTTGTTATTCTTCCTTTTTGTTAATTTGGGTTAGTTTACTATCTGTAGGAAAGCAAGGGTTTTTGGGTTTTGGAGGAGATATGACAACTC TTTCTCCCTTACTTGCAATAACCCCATTATGCTTCTGTAACTGTGGATCCGTAGAATCATCTAAATCGATTCATTATGTCTGTAAAACTAAAAAATCCAG ACCCACAAGGCGGTTTGGGAGGATGGATGTTGGTAAAGATTCGAGATTGTTGTTTGCTAGATCAAGAGTTGCTGCCCAGCCAACTGAGCAGATGATGTTT ACTTCAAGCAATCCATTAGTTGACCAACTAAAGGAAGTTTCGACTTATCGATTTCGGACGGAAATTGGTGGTCATGTCAAAATTTCTGTTGGGAAGATAA ACGGGAAGTATGCAGTTTATGTTGAAGTTTCATCCTTGGAATTGGGTGCTAGTGATAGTATTAGTCTGATGCTTATCTGGGGCATATACACGTCTGATTC GTCATGTTTCATGCCTCTTGACTCATCCTCTCATGCCAGGACCAGAGAGACTCCGCTCTTACAGAATTCTTGTGCTAGGTTTGCTACTGAGTTGGAGTTT GAAGCTAAACAAACCCCCTTCTACCTCTCATTTTTTCTCAAACCTACATCAAGTGTTGTGGAAATCAGGAATCATAACAAGTCTAATTTTTGTGTTCCGA TTGGATTTGATTCTGGTTATCCAACTCCACTTGGTCTTTCCTTTTCTACTGATGGTTCCATGAATTTTGCATTTTTTTCAAGGAACGCGGCGGGTTGCGT TCTATGTTTGTATGATGATAGTACATCAGGCAAGCCTGCCTTAGAGCTCGATCTAGATCCATATGTTAATCGATCAGGTGATATCTGGCATGCCTCACTG GAAGGTGCATGGACTTTTCTGAGCTATGGTTATCGATGTAAAGGAGCTGCTCTTCAGAGTGACGCAGATAAATTTGATGCTGGCCGTGTTCTTTTGGATC CATATTCTAAAATTATCATTAATTCCGTCACAGATAATGTATCTGGCCTGCTGCCTAAGTATCTGGGACGATTATGCAAAGAACCTGTTTTTGATTGGAG TGATGATGTTCCTCCTCACTTGGAAATGGAGAAACTAGTTGTTTATCGGGTGAATGTGATGCGTTTTACAAAAGACAACTCTAGCCAGATATCCAGTGAT GCTGCAGGGACCTTTGCTGGTTTGATTGAGAAGTTAAGTCATTTTAAGAATCTTGGTGTGAATGCAGTCCTATTAGAGTCAATATTTCCGTTTGATGAGC AAAAGGGGCCGTATTTTCCATGTCATTTCTTTTCACCATCAAACGTTTATGGTCCTTCTAATGGCTCCGTGGCTGCCATTAGCTCGATGAAAGAGATGGT AAAGAGATTGCATGCCAATGGGATAGAAGTTTTGCTGGAAGTTGTTTTCACCCATACTGCTGAAGCTGGAGCATTACAAGGAATTGATGACTCATCCTAC TATTGCACCAGCATTACTACAGGTTTGGACTCACAAAATGCTTTGAATTGTAATCATCCTATCGTCCAAAGGGTGATTCTGGATAGTCTACAGCACTGGG TTACTGAGTTTCACATAGATGGTTTCTGTTTCATAAATGCTTTATCTCTGTTGAGGTCGTTTGGTGGTGAATATTTGTCTCGTCCTCCCGTTGTTGAAGC AATAGCCTTTGATCCATTGTTCTCAAAGACAAAGATCATTGCAGATTGTTGGGATCCCAAAGAACTGGAGGCAAAGGAAACTGCCTTTCCTCATTGGAAG AAATGGGCTGAAATGAATACAAAATTTTGTTACGATATAAGAAATTTTTTGAGGGGTGAGGGTCTTCTTAGTGACCTCGCAACACGGCTTTGTGGGAGTG GGGACATCTTTTCTAGCGGACGAGGCCCAGCCTTCTCTTTCAATTTTATCACCAGGAACTTTGGACTTCCTCTTGTGGACTTAGTCAGCTTCAGTGGCGA TGAGTTAGCTTCAGAATTAAGTTGGAATTGTGGAGAAGAAGGACCCACAAACAAAACCACTATCCTTGAAAGACGACTGAAACAAATCCGTAACTATCTC TTTGTTTTGTTTGTTTCACTTGGTGTTCCAGTTCTAAACATGGGAGATGAGTGTGGCCAATCTTCTGGGGGTTCCACTTCATATGGTAGCAGAAAACCTT TTGATTGGAATGCGCTGTCAACAGGTTTTGGTATCCAAACCACACAGTTCATCTCATTTTTGAGTTCCTTGAGAATGAGGCGAAGTGACCTCCTTCAGAA GAGAAACTTTTTGAAGGAAGAAAATATTGACTGGCATGGAAGTGACCAGAATCCCCCAAGATGGGAAGATCCATCCTGCAAGTTCCTTGCCATGACACTG AAGGTTGACAACCCAGGGAGTGGATTGAGCTCTGAATCTTCCCATGTAGAGGGTGACATGTTCATTGCTTTCAATGCAGCGGGACGCTCAGAGAGTGTCA CTCTACCCGAAGTCCCTGAAGGGATGGCATGGCATCGCTTGGTTGATACAGCTCTTCCATTCCCAGGGTTCTTCTCAAATGATAGTGAGCCTGTCATTAG GCAGCCTTATGAAATGAAATCTCACAGCTGCATACTGCTTGAAGCCAACATCCATGATGATTGA
AA sequence Show only first row Show all	>Potri.002G219900.2 pacid=42777342 polypeptide=Potri.002G219900.2.p locus=Potri.002G219900 ID=Potri.002G219900.2.v4.1 annot-version=v4.1 MHLFCYSSFLLIWVSLLSVGKQGFLGFGGDMTTLSPLLAITPLCFCNCGSVESSKSIHYVCKTKKSRPTRRFGRMDVGKDSRLLFARSRVAAQPTEQMMF TSSNPLVDQLKEVSTYRFRTEIGGHVKISVGKINGKYAVYVEVSSLELGASDSISLMLIWGIYTSDSSCFMPLDSSSHARTRETPLLQNSCARFATELEF EAKQTPFYLSFFLKPTSSVVEIRNHNKSNFCVPIGFDSGYPTPLGLSFSTDGSMNFAFFSRNAAGCVLCLYDDSTSGKPALELDLDPYVNRSGDIWHASL EGAWTFLSYGYRCKGAALQSDADKFDAGRVLLDPYSKIIINSVTDNVSGLLPKYLGRLCKEPVFDWSDDVPPHLEMEKLVVYRVNVMRFTKDNSSQISSD AAGTFAGLIEKLSHFKNLGVNAVLLESIFPFDEQKGPYFPCHFFSPSNVYGPSNGSVAAISSMKEMVKRLHANGIEVLLEVVFTHTAEAGALQGIDDSSY YCTSITTGLDSQNALNCNHPIVQRVILDSLQHWVTEFHIDGFCFINALSLLRSFGGEYLSRPPVVEAIAFDPLFSKTKIIADCWDPKELEAKETAFPHWK KWAEMNTKFCYDIRNFLRGEGLLSDLATRLCGSGDIFSSGRGPAFSFNFITRNFGLPLVDLVSFSGDELASELSWNCGEEGPTNKTTILERRLKQIRNYL FVLFVSLGVPVLNMGDECGQSSGGSTSYGSRKPFDWNALSTGFGIQTTQFISFLSSLRMRRSDLLQKRNFLKEENIDWHGSDQNPPRWEDPSCKFLAMTL KVDNPGSGLSSESSHVEGDMFIAFNAAGRSESVTLPEVPEGMAWHRLVDTALPFPGFFSNDSEPVIRQPYEMKSHSCILLEANIHDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	0	1
AT2G04790			unknown protein		Potri.014G162700 [exp]	2.44	0.9518
AT2G46220			Uncharacterized conserved prot...		Potri.014G092200 [exp]	3.46	0.9423
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	6.70	0.9426
AT1G57790			F-box family protein (.1)		Potri.016G079300 [exp]	8.71	0.9283
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	10.24	0.9457
AT3G22210			unknown protein		Potri.006G021100 [exp]	10.95	0.9340
AT5G08400			Protein of unknown function (D...		Potri.010G255300 [exp]	11.66	0.9298
AT4G21500			unknown protein		Potri.004G034200 [exp]	12.64	0.9315
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.003G160100 [exp]	13.92	0.8989
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Potri.013G026500 [exp]	15.19	0.9421

Compare expression of checked genes

Potri.002G219900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.