Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63090 498 / 2e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 174 / 9e-50 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 169 / 4e-47 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 163 / 7e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 156 / 5e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 155 / 6e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 136 / 5e-36 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 135 / 6e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 129 / 8e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G79120 126 / 2e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G191100 [exp] 185 / 4e-54 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G169300 [exp] 171 / 8e-48 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 169 / 4e-47 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 160 / 1e-44 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 153 / 5e-42 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 151 / 5e-41 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 153 / 2e-40 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 144 / 1e-38 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 137 / 6e-36 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000096 [exp] 531 / 0 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 527 / 0 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012374 [exp] 491 / 7e-171 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028011 [exp] 243 / 2e-79 AT3G63090 261 / 6e-87 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028012 [exp] 207 / 8e-66 AT3G63090 234 / 7e-77 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 186 / 3e-54 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 182 / 9e-53 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10029446 [exp] 160 / 6e-44 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 160 / 8e-44 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 157 / 2e-43 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.002G220000.1 pacid=42777719 polypeptide=Potri.002G220000.1.p locus=Potri.002G220000 ID=Potri.002G220000.1.v4.1 annot-version=v4.1 ATGCTCTTCAAAACCTACTCCATTTATACTACTAGAACTAAGCACTTGTTGCATAGAAAATCTCTCATAAACCCTGCTTTCAACCTCCACACCAAACCCA TTTCAAGCCTCAAAGTTGTGTGGCGCAGGGACCCACAACTAGACCATGCCATTGAGAGAGATAAGCCATACAAAATCTGCTCAAAAGTTGTCAAAGAGGT CCTTAACGAACCGGGTCAAGTAATCCCACTTCGTTACCTCGAAAACAGGCGCGAGAGATTGCGCCTCAATGTAAGAATTTCTACTTTTCTTAATAAAAAC CCTGCCCTCTTTGACGTTTACCAGGATCGAATCAAACCCAAGTCAGAACCCGTCCGGTTTGTCCGTGTTAGCCATCGGTTAAGGAATTTTCTTGAAGAAG AGAAAAGGATTGTTTTGGAAAATGAGGGGTGGATTGTTTCGAAATTGTGTAAGTTGCTGATGATGGCTAAGGATAAGGTCCTTAGTGTGGATAAATTGGT ACATGTGAAGAGAGAATTTGGTTTTCCTAATGACTTTTTGGTTAATTTGGTTCCTAATTATCCAAACTATTTTAGGCTAATTGGTCCTCCTGAGGAGGGA AAGTCATTTCTTGAGTTGGTTGAATGGAATCCTGAGTTTGCAAAATCAATAATTGAGCAAAGAGCTGAAGATGAGTTTGGGTTGACGGGAATTCGTATTA GGCCTAATTTTTACTACAAGCTTCCTCCGGGGTTCTTCTTGAGGAAGGAGATGAGGGAGTGGATTCGGGATTGGTTGGAACTTGATTACATATCACCATA TGTTGATGTGTCACACTTGGATCAAGCTTCACAGGAAATGGAGAAGAGGACTGTTGGGGTTTTCCATGAGTTGCTATCTCTTTCGTTGTTCAAGAGGATT CCAGTGCCCATACTGGGGAAGTTTAGTGATGAGTACAGGTTTTCCAACACATTTTCAAGTGTGTTCACTAGGCATCCAGGAATATTTTACATGTCACTGA AAGGAGGGATTAAGACTGCGATGCTAAGGGAAGCTTATAAGGACAGCGAGTTGATTCAAAGGGATCCTTTGCTTGAAATAAAGGACAAGTTTGTTCAGTT GTTGGAAGAGGGGTGGCAGGAGAGACAGGAGCAGTTGAGGTTACAAAGGGAAGAGGTTAAGAAGAACAGAGTAATGATGGCATTGGGGGATGGGGACACC GATGGACAAGAGAGCAGCAGGGAATTCGATGGGCAAGAAGTCAAGTGA
AA sequence Show only first row Show all	>Potri.002G220000.1 pacid=42777719 polypeptide=Potri.002G220000.1.p locus=Potri.002G220000 ID=Potri.002G220000.1.v4.1 annot-version=v4.1 MLFKTYSIYTTRTKHLLHRKSLINPAFNLHTKPISSLKVVWRRDPQLDHAIERDKPYKICSKVVKEVLNEPGQVIPLRYLENRRERLRLNVRISTFLNKN PALFDVYQDRIKPKSEPVRFVRVSHRLRNFLEEEKRIVLENEGWIVSKLCKLLMMAKDKVLSVDKLVHVKREFGFPNDFLVNLVPNYPNYFRLIGPPEEG KSFLELVEWNPEFAKSIIEQRAEDEFGLTGIRIRPNFYYKLPPGFFLRKEMREWIRDWLELDYISPYVDVSHLDQASQEMEKRTVGVFHELLSLSLFKRI PVPILGKFSDEYRFSNTFSSVFTRHPGIFYMSLKGGIKTAMLREAYKDSELIQRDPLLEIKDKFVQLLEEGWQERQEQLRLQREEVKKNRVMMALGDGDT DGQESSREFDGQEVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63090			Ubiquitin carboxyl-terminal hy...		Potri.002G220000 [exp]	0	1
AT2G47790			Transducin/WD40 repeat-like su...		Potri.014G130600 [exp]	5.19	0.7951
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	7.21	0.8366
AT3G59630			diphthamide synthesis DPH2 fam...		Potri.006G123700 [exp]	7.48	0.7820
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.004G217900 [exp]	12.24	0.7950
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	13.71	0.7951
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	14.42	0.7563
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	14.83	0.7628
AT1G12830			unknown protein		Potri.017G061400 [exp]	15.96	0.7548
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	18.00	0.7903
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	18.97	0.7785

Compare expression of checked genes

Potri.002G220000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.