Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 559 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 544 / 0 MEF22 mitochondrial editing factor 22 (.1) AT3G49142 528 / 3e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 518 / 7e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 511 / 6e-173 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 509 / 2e-169 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 503 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 504 / 1e-167 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 499 / 1e-167 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 490 / 2e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 577 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 570 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 569 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 562 / 0 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 562 / 0 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 558 / 0 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G059400 [exp] 537 / 3e-180 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 532 / 4e-180 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 529 / 3e-179 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029436 [exp] 565 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 549 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 524 / 5e-177 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 516 / 2e-172 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10001220 [exp] 516 / 4e-172 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 510 / 6e-172 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 507 / 8e-170 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000706 [exp] 506 / 7e-169 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10040680 [exp] 501 / 4e-168 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 504 / 9e-168 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G220300.1 pacid=42778627 polypeptide=Potri.002G220300.1.p locus=Potri.002G220300 ID=Potri.002G220300.1.v4.1 annot-version=v4.1 ATGATGATCCATCCATCATACAGGTTTGTAAGAGAAGAAGATTTCCCTCCATGTTTGTTTAATATGAATAAGGTAAACCATTGGTTTCGTCGCGGTTTCT GCTGTGTCTGTGCAGAAGCAAAAACACAAACATCAGCACCAATAGAAGCAGACACATGCACATCACTCATCAAGCAATGCGGCACGTCCCTCCTTTCCCT CAAAACTTTCCATGCCTCCATGCTCAAATCCCACCTCCACCGCAACCTCCACTTCCTCACCAACCTCATTGCCCAATACGCCTCTTTGGGCTCCGTTTCT TACGCCTACTCCCTCTTCTCTTCTACCCCATCCGCCGATCTCTTCCTCTGGAATGTCATGATTCGTGGCCTTGTAGATAATTCACATTACCATCATGCCA TTCTTCTGTACAAGCAAATGCTGAGATTGGGCATTCAGCCCGACAATTTTACCTTCCCTTTTATTATCAAGGCCTGCAGCTGTCTCCGCCACTTTGAATT TGGTATTCGGGTTCATCAAGATGTTGTTAAATTTGGGTACCAGTCTCAAGTTTTTATTTCCAATTCTCTCATTACCATGTATGGTAAATGTGACAAGTAT GAGCTTTCTCGCCAAGTGTTTGATGAAATGCCTGACAAAAATGCTGTTTCGTGGAGTGCTATAATCGGTGCTTGCTTGCAGGATGACCGTTGTAAAGAAG GTTTTTCATTGTTTCGGCAGATGCTAAGTGAGGGATCTAGACCCAGCAGGGGTGCTATTTTGAATGCGATGGCCTGTGTTCGTAGTCATGAGGAAGCTGA TGATGTTTATAGAGTAGTTGTAGAAAATGGACTTGATTTAGATCAGTCTGTCCAGAGTGCAGCCGCGGGAATGTTCGCTCGATGTGGGAGAGTGGAAGTT GCAAGAAAGTTGTTTGATGGCATTATGAGTAAGGATTTGGTGACATGGGCAACAACGATCGAGGCTTATGTCAAGGCTGATATGCCTCTTGAAGCTTTAG GCCTTTTAAAACAAATGATGTTGCAAGGGATATTCCCTGATGCTATCACCCTTCTTGGTGTGATCCGAGCTTGTTCTACTCTAGCATCTTTCCAGCTCGC TCATATAGTTCATGGGATCATAACTACTGGGTTCTTCTACAATCAATTACTAGCAGTAGAAACTGCCCTGATTGATCTTTATGTGAAATGTGGAAGCTTA ACTTATGCTAGAAAAGTTTTTGATGGGATGCAGGAGAGAAATATCATCACATGGAGTGCCATGATTTCAGGCTATGGGATGCATGGCTGGGGAAGAGAAG CTCTCAATCTCTTTGATCAAATGAAGGCTTCTGTAAAGCCAGATCATATAACATTTGTATCAATATTGTCAGCATGTAGTCATTCAGGTTTAGTTGCTGA AGGATGGGAGTGCTTCAATTCCATGGCTAGAGATTTTGGAGTCACACCAAGACCCGAACACTATGCATGTATGGTTGATATTCTAGGCCGAGCTGGAAAG CTAGATGAAGCTTGCGATTTTATTGAGAGAATGCCAGTAAGGCCTAATGCAGCTGTCTGGGGGGCACTTCTTGGGGCATGTAGAATACATTTAAATGTAG ACCTTGCTGAAATGGTAGCAAGAGCATTATTTGATTTGGATCCTCATAACGCTGGGAGATATGTCATCTTGTATAACATTTACACATTGACTGGCAAAAG AAAAGAAGCTGATTCAATTAGAACACTTATGAAGAACAGAGGGGTGAAAAAAATTGCTGGGTACTCAGTTATAGAGATTAAAAACAAGCTCTATGCATTC GTAGCTGGGGATAGGTCACACCCACAAACAGATCTAATTTATTCAGAGTTAGAAAGATTGATGGACAGGATTCGTCAAGAAGGGTACACACCAGATATTA ACTTTGTATTGCATGATGTGGATGAAGAGACAAAGGAGAGCATGCTTTACTTGCATAGTGAGAAGTTGGCCATTGTGTTTGGCCTCTTAAATTTGGGGCC CGGGAGTGTAATCAGGATTAGGAAAAATCTTAGGGTATGTGGGGATTGCCATACTGCTACCAAGTTCATCTCTAAGGTTACTGGAAGGGAGATTGTTGTG AGAGATGCTCATAGATTCCACCATTTCAAGAATGGAGCATGCTCTTGCAGGGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.002G220300.1 pacid=42778627 polypeptide=Potri.002G220300.1.p locus=Potri.002G220300 ID=Potri.002G220300.1.v4.1 annot-version=v4.1 MMIHPSYRFVREEDFPPCLFNMNKVNHWFRRGFCCVCAEAKTQTSAPIEADTCTSLIKQCGTSLLSLKTFHASMLKSHLHRNLHFLTNLIAQYASLGSVS YAYSLFSSTPSADLFLWNVMIRGLVDNSHYHHAILLYKQMLRLGIQPDNFTFPFIIKACSCLRHFEFGIRVHQDVVKFGYQSQVFISNSLITMYGKCDKY ELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDLDQSVQSAAAGMFARCGRVEV ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSL TYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGK LDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAF VAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVV RDAHRFHHFKNGACSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	0	1
AT4G15720			Tetratricopeptide repeat (TPR)...		Potri.008G217000 [exp]	2.82	0.8572
AT3G52905			Polynucleotidyl transferase, r...		Potri.001G104800 [exp]	4.00	0.8691
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	4.24	0.8665	Pt-ERG.1
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	5.74	0.8814
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	6.32	0.8878
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	7.74	0.8298
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	8.36	0.8662
AT1G09190			Tetratricopeptide repeat (TPR)...		Potri.005G019400 [exp]	8.36	0.8396
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	9.74	0.8666
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	11.61	0.8444

Compare expression of checked genes

Potri.002G220300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.