Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06430 405 / 1e-138 FTSH8 FTSH protease 8 (.1) AT2G30950 402 / 2e-137 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G15250 357 / 8e-120 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT5G42270 306 / 5e-100 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 306 / 1e-99 FTSH1 FTSH protease 1 (.1) AT2G29080 257 / 4e-80 FTSH3 FTSH protease 3 (.1) AT3G47060 255 / 2e-79 FTSH7 FTSH protease 7 (.1) AT5G58870 253 / 1e-78 FTSH9 FTSH protease 9 (.1) AT1G07510 247 / 2e-76 FTSH10 FTSH protease 10 (.1) AT3G02450 243 / 2e-76 cell division protein ftsH, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215100 [exp] 418 / 3e-143 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 411 / 2e-140 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 367 / 2e-123 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G012000 [exp] 306 / 1e-99 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 302 / 4e-98 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.001G249100 [exp] 255 / 2e-79 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.009G043100 [exp] 253 / 5e-79 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.009G033600 [exp] 247 / 3e-76 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 244 / 4e-75 AT2G29080 1123 / 0.0 FTSH protease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001054 [exp] 406 / 7e-139 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 406 / 2e-137 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 305 / 7e-102 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 305 / 6e-99 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 303 / 2e-98 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10018210 [exp] 260 / 2e-81 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 256 / 1e-79 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 255 / 2e-79 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10005868 [exp] 253 / 2e-78 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10001573 [exp] 246 / 4e-76 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06068 [poplar] [flax] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.002G220366.1 pacid=42777787 polypeptide=Potri.002G220366.1.p locus=Potri.002G220366 ID=Potri.002G220366.1.v4.1 annot-version=v4.1 ATGGAACCAAACACTGGGGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCAAAGCAGGATTTCATGGAGGTAGTGGAGTTTCTCAAGAAGCCTGAGA GATTCACTGCAGTAGGGGCTCGCACTCCGAAAGGTGTTCTTCTTGTTGGACCTCCAGGTACTGGGAAGACTCTTCTGGCCAAGGCAATTGCTGGTGAAGC GGGTGTTCCGTTTTTCTCCATTTCAGGTTCGGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGTTGGTGCCTCTCGAGTCCGGGATCTCTTCAAGAAGGCC AAAGAGAATGTTCCTTGCATTGTATTTGTGGATGAAATTGATGCCGTGGGAAGGCAAAGAGGAACTGGAATTGGCGGAGGAAATGATGAAAGAGAGCAGA CCCTTAACCAGCTTCTGACAGAAATGGATGGTTTTGAGGGTAATACTGGCATCATTGTCGTTGCAGCAACTAACAGGGCAGACATTCTTGACTCTGCCTT GTTGAGGCCAGGACGGTTTGATAGACAGGTGACTGTTGATGTCCCGGATGTACGGGGAAGAACAGGGATACTGAAAGTTCATGCTAGCAACAAGAAATTT GATGCTGATGTGTCTCTTGATGTGGTAGCCATGAGAACACCTGGTTTCAGTGGGGCTGATCTTGCAAACCTCTTGAATGAGGCAGCTATTCTAGCTGGGC GGCGTGGAAAGGCAGCAATTTCATCTAAAGAGATTGATGATTCAATTGATAGATTATGTGGAAGAAGGAATAAAAACTACTTCGAAACCCAGTAA
AA sequence Show only first row Show all	>Potri.002G220366.1 pacid=42777787 polypeptide=Potri.002G220366.1.p locus=Potri.002G220366 ID=Potri.002G220366.1.v4.1 annot-version=v4.1 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARTPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGVGASRVRDLFKKA KENVPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVTVDVPDVRGRTGILKVHASNKKF DADVSLDVVAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRLCGRRNKNYFETQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	0	1
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	2.23	0.9784
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.002G215100 [exp]	3.00	0.9946
AT4G36530			alpha/beta-Hydrolases superfam...		Potri.005G121000 [exp]	3.74	0.9663
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	4.00	0.9804
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Potri.003G005800 [exp]	6.32	0.9633
AT5G55710		AtTic20-V	translocon at the inner envelo...		Potri.004G191700 [exp]	6.92	0.9607
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	6.92	0.9671	FTSH2.2
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059600 [exp]	11.31	0.9644
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	13.41	0.9633	Pt-CTF2.2
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.007G046400 [exp]	15.96	0.9587

Compare expression of checked genes

Potri.002G220366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.