Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26630 481 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 299 / 3e-95 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G20540 296 / 2e-94 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 286 / 1e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 287 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 282 / 7e-88 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 282 / 2e-87 SLO1 SLOW GROWTH 1 (.1) AT4G18840 275 / 5e-86 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 278 / 1e-85 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 275 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202600 [exp] 341 / 6e-112 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G369900 [exp] 306 / 2e-97 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 304 / 1e-96 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 302 / 1e-96 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.018G035900 [exp] 300 / 5e-96 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.009G044700 [exp] 304 / 3e-95 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 295 / 8e-94 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 294 / 2e-92 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G108500 [exp] 287 / 4e-91 AT4G18840 382 / 3e-127 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007341 [exp] 326 / 9e-106 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024971 [exp] 304 / 2e-96 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 303 / 7e-96 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 296 / 2e-93 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 295 / 8e-93 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 294 / 2e-91 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 288 / 3e-89 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 284 / 9e-89 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030125 [exp] 280 / 1e-88 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10015718 [exp] 280 / 6e-88 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G220600.1 pacid=42777590 polypeptide=Potri.002G220600.1.p locus=Potri.002G220600 ID=Potri.002G220600.1.v4.1 annot-version=v4.1 ATGGTCGCATGCCTTTCGTCTACTCTACCTGATGCTCTTATTATATCCAGCAGAAGAAGAAGCCCATTCTTGAACTCTCACTATCACACTAGTTCCACAT GTTGGCCTAAGTTTGGTTCTGCTGAAGCTCTCCTTTTACTCCAAAACTGCACCAGTTTCAATCATCTCAAACTAGTCCATGGTAAGATCATCCGCAATGC CCTCTCTGCTAATCAATTACTTGTTAGGAAATTGATCCACCTCTGTTCTTCTTATGGGAGATTGGATTATGCTGCTTTACTTTTCCATCAAGTTCAAGAA CCCCATACTTTTACTTGGAATTTCTTGATTAGGACGTACACTATTCATGGATATTCTATGAAAGCTCTCCTTCTCTATAACCTCATGATTCGCCGTGGCT TTCCTCCCGATAAGTTCACTTTCCCTTTCGTTGTTAAGGCGTGTTTGGCCTCCGGTTCCATCAGAAAAGGGAAAGAGGTCCATGGCCTCGCTATTAAAAC TGGGTTTTCAAAGGATATGTTTTTGTACAACACTTTGATGGATCTTTATTTCAGCTGCGGGGATGAGGGCTATGGACGCAAGGTGTTTGACAAAATGCGT GTTCGAAATGTGGTTTCGTGGACCACTTTTATTGCAGGACTTGTTGTTTGTGGAGATCTGGATGCTGCTCGACGGGCTTTTGATCAAATGCCAACACGCA ATGTCGTTTCCTGGACGGCAATAATTAATGCGTATGTGACGAACCAACGACCTCATGAGGCGTTTGAATTGTTTTGGAGAATGTTGCTTGCTAATGTGAA GCCCAATGAGTATACTCTGGTTAATTTGTTAAAGGCGTGCTCCGAGTTGGGTAGTCTTAAATTGGGTAGATGGATTCATGATTATGCACTCAAGAACGGG TTCGACCTTGGGGCTTTCCTTGGGACTGCTCTTATTGACATGTATAGCAAATGTGGCAGTTTGGATGATGCCAGGCAAGTATTTCGCGAGATGCAAATAA AAAGTTTAGCTACATGGAATGCTATGATAACTAGCTTGGGGGTGCATGGATATGGGGAGGAGGCCCTTTCTCTTTTTACAAAGATGGAGGAGGCAAATGT ACGGCCAGATGCAATCACTTTTGTAGGTGTCATATGCGCTTGTTTACAGACTGACAAAGTAAGAGAGGGTGATATGTACTTCAAATATATGAGAGAACAC TATGGGATAACTCCTGTTGTAGAACATTATACTTGTATGATTGAACTATATAGTCGTGCCAACTTGTTGAATGCACTGGACGAATTAGTGAAGGGCATGC CAAGGGAGCTGAGTGACGATGTAGCAGCAGCATGGATTAAGTCAAGGTTAATCGATGATATTGATGATACAGAAAATTCTTTGGAGCACCAAGGCGAAGA ATTGCAGTACTGGGAAACACGAACAGAACATTTGTCCCAGTATCAGCTTCAGGGCTTCAAATGGGATGTCGGTTGA
AA sequence Show only first row Show all	>Potri.002G220600.1 pacid=42777590 polypeptide=Potri.002G220600.1.p locus=Potri.002G220600 ID=Potri.002G220600.1.v4.1 annot-version=v4.1 MVACLSSTLPDALIISSRRRSPFLNSHYHTSSTCWPKFGSAEALLLLQNCTSFNHLKLVHGKIIRNALSANQLLVRKLIHLCSSYGRLDYAALLFHQVQE PHTFTWNFLIRTYTIHGYSMKALLLYNLMIRRGFPPDKFTFPFVVKACLASGSIRKGKEVHGLAIKTGFSKDMFLYNTLMDLYFSCGDEGYGRKVFDKMR VRNVVSWTTFIAGLVVCGDLDAARRAFDQMPTRNVVSWTAIINAYVTNQRPHEAFELFWRMLLANVKPNEYTLVNLLKACSELGSLKLGRWIHDYALKNG FDLGAFLGTALIDMYSKCGSLDDARQVFREMQIKSLATWNAMITSLGVHGYGEEALSLFTKMEEANVRPDAITFVGVICACLQTDKVREGDMYFKYMREH YGITPVVEHYTCMIELYSRANLLNALDELVKGMPRELSDDVAAAWIKSRLIDDIDDTENSLEHQGEELQYWETRTEHLSQYQLQGFKWDVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26630			Tetratricopeptide repeat (TPR)...		Potri.002G220600 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	2.82	0.9697
AT3G18870			Mitochondrial transcription te...		Potri.004G150600 [exp]	6.16	0.9702
AT5G52960			unknown protein		Potri.012G033700 [exp]	7.93	0.9701
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	8.12	0.9680
AT1G49975			unknown protein		Potri.009G086400 [exp]	9.89	0.9673
AT3G06950			Pseudouridine synthase family ...		Potri.008G206200 [exp]	10.39	0.9639
AT4G21500			unknown protein		Potri.004G034200 [exp]	11.13	0.9462
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.002G016401 [exp]	11.66	0.9671
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.007G128200 [exp]	11.83	0.9633	GUN4.2
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	12.24	0.9629

Compare expression of checked genes

Potri.002G220600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.