Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05230 696 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 696 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 539 / 0 Domain of unknown function (DUF3444) (.1) AT5G53150 270 / 5e-80 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 200 / 4e-55 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 174 / 5e-47 unknown protein AT5G18750 152 / 3e-38 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G35540 145 / 1e-36 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 147 / 2e-36 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G06340 145 / 2e-36 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165600 [exp] 1250 / 0 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 498 / 7e-167 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 451 / 2e-148 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 447 / 5e-147 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 291 / 2e-87 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 290 / 5e-85 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 283 / 5e-85 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 198 / 5e-54 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 181 / 1e-47 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006380 [exp] 514 / 7e-173 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 509 / 4e-171 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 497 / 1e-170 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 438 / 1e-144 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 416 / 7e-140 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 424 / 5e-139 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 276 / 3e-83 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 273 / 4e-82 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 246 / 1e-69 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 245 / 2e-69 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.002G221000.3 pacid=42779232 polypeptide=Potri.002G221000.3.p locus=Potri.002G221000 ID=Potri.002G221000.3.v4.1 annot-version=v4.1 ATGGAATCAAATATAGAAGAGGCTGTCAAGGCAAAAGAGTTTGCTGAGAAGCGATTTGCCGAGAGAGATTTTGCTGGTGCAAAGAAACATGCGTTAAAGG CAAAAACTTTGTGTCCTGGATTAGAGGGTATATCTCAGATGGTGGCCACTTTCGAAGTTTATGTTGCCTCTCAGGCCAAATGCAATGGTGAAGTTGACTA TTTCTCTATTCTTGGTTTGAAGCCTTCTGCAGATAAAGATGCAGTGAAAAAGCAGTATAGGAAGATGGCCGTGCTGCTCCATCCAGATAAGAATAAAACT GTGGGAGCTGATGGAGCGTTTAAACTTGTATCTGAAGCATGGACTATGTTGTCAGATAGTCTTAAGAAAAACTCTTACAATGTCAAGAGAAACAAACAGA TGGCATCTTGTGCTGTTCAGACAAACTTATCTTCAGTTCATGCTGCTGGGGTTACAGGATATAACCAATGTTCCAATTCACCCACTGCTCATGGACTTGA TACTTTCTGGACAGTCTGCACATCTTGTAAAGTTCAGTATGAGTATCTTCGAAAGTATGTGAATAAGAAACTTTCTTGTAAGAACTGCCGGGGTACTTTC ATTGCCATTGAAACTGGGGCAGCTCCTGTCAATGGTTCTTTCCCTTACTGCCCTTGGTCATATGTCCCTGGTAATGGGTATAGATGTCATGGATATGATG GGGTTGCATGTGTCCCAACCACCACTACCCTATATACAGGAAATGGGGTCTCAGGATTGGATGCTGGACACAGGTATGAGCATGTTTCAAATGTTTCATT TCAGTGGAGCTCATTCTCTGGAACTTCTGGGGATGCTGTGGGTCCCAATGGATCATGTGCAGTATCTTCTGATATTGTTTATCAGGCTAATGGAAATGTT AGTGCAGCAAAGGTTAAACCAGCAGCCAATGGAAGGCGATCCATGAAAACTGCCACAGAAAAAGTATACTCTGATGTATCTGCAAGCTGTAATGAATTTT CAGGCTCCAAGACTGGTAGACCTGATAAGAAAAGGAAGGTGTCTATTGGTTCCACTTCAAGAAATGGGCATGAAGAAAATGAACCTAAATTGGGTTCAGA AGTAAGACTAGCTAACGGATGTGCAAATGTTGAGCACGACACCAAGCTTTCCATTCCAAGTGAAGTTCCAACAAGACGCAGCTTGATTGCGCCAGCTTTT GATGCCAGAAAGTTGTTGATTGACAAAGCAAGGACCGACATCAGGAAGAAATTGGAGGAGATGAGATTAGCTTCAGCTGCAGCAGTTACAAAGAACATTG AAGATCTGTTCACCAAGGCAGGAGAGGCTCCTAAACAATCAAATTCTGATATTACTGGTCATCATACAAAGCCAAACAAAATCGAGCCAATCTCGATAAC AGTCCCTGACCCTGATTTCCATGATTTTGACAAAGATAGAGCAGAGGAATGCTTCAAGCCAAAACAAATATGGGCTTTGTATGATGAAGATGATGGTATG CCACGCTTATACTGTTTGATTCGCCAGGTGGTCTCAGTTAAACCCTTTAAGATTCACATCACTTACTTGAACTCTAAAACTGATAGTGAATTTGGGGTAG TAAATTGGATAGATTCTGGGTTTGCTAAATCTTGTGGACACTTCAGAGCATGGAATTCTGATGTTGTTGATCAAGTCAACATTTTTTCTCATGTTATGAA AGGAGAAAAGCCTGGTAGAGGTGGTTGTGTTCGAATATACCCAAAAAGTGGAGATGTTTGGGCTGTTTATCAAAACTGGTCACCTGATTGGAACAGATCA ACCCCAGATGATGTCAGGCACCAGTATGAGATGGTAGAGGTCCTTGATAATTACTCTGAAGAGCTTGGAGTTTGTGTTACTCCTCTGATCAAGTTGACTG GTTTCAAAACAGTATACCAGAGGAATACAGACAAGGGTGCCATTAGATGGATTCCAAGAAGAGAGATGGTACGCTTTTCTCATCAGGTGCCTTCTTGGTC TCTTGAAGGAGAAGCTAGTAATTTGCCAGAAAAGTGTTGGGATCTGGACCCAGCTGCAACTCCAGATGAGCTACTTCATGCTGCAACAGAAGCGAAGGCT TAG
AA sequence Show only first row Show all	>Potri.002G221000.3 pacid=42779232 polypeptide=Potri.002G221000.3.p locus=Potri.002G221000 ID=Potri.002G221000.3.v4.1 annot-version=v4.1 MESNIEEAVKAKEFAEKRFAERDFAGAKKHALKAKTLCPGLEGISQMVATFEVYVASQAKCNGEVDYFSILGLKPSADKDAVKKQYRKMAVLLHPDKNKT VGADGAFKLVSEAWTMLSDSLKKNSYNVKRNKQMASCAVQTNLSSVHAAGVTGYNQCSNSPTAHGLDTFWTVCTSCKVQYEYLRKYVNKKLSCKNCRGTF IAIETGAAPVNGSFPYCPWSYVPGNGYRCHGYDGVACVPTTTTLYTGNGVSGLDAGHRYEHVSNVSFQWSSFSGTSGDAVGPNGSCAVSSDIVYQANGNV SAAKVKPAANGRRSMKTATEKVYSDVSASCNEFSGSKTGRPDKKRKVSIGSTSRNGHEENEPKLGSEVRLANGCANVEHDTKLSIPSEVPTRRSLIAPAF DARKLLIDKARTDIRKKLEEMRLASAAAVTKNIEDLFTKAGEAPKQSNSDITGHHTKPNKIEPISITVPDPDFHDFDKDRAEECFKPKQIWALYDEDDGM PRLYCLIRQVVSVKPFKIHITYLNSKTDSEFGVVNWIDSGFAKSCGHFRAWNSDVVDQVNIFSHVMKGEKPGRGGCVRIYPKSGDVWAVYQNWSPDWNRS TPDDVRHQYEMVEVLDNYSEELGVCVTPLIKLTGFKTVYQRNTDKGAIRWIPRREMVRFSHQVPSWSLEGEASNLPEKCWDLDPAATPDELLHAATEAKA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	0	1
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Potri.014G145400 [exp]	11.83	0.6655
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	16.00	0.6876
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.006G158676 [exp]	16.09	0.6439
AT4G01210			glycosyl transferase family 1 ...		Potri.014G092500 [exp]	24.24	0.6163
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	24.37	0.6353
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	49.47	0.6598
AT2G24960			unknown protein		Potri.017G120900 [exp]	64.62	0.6531
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Potri.005G071000 [exp]	70.09	0.6623
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G132800 [exp]	94.99	0.5966
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	96.12	0.6494

Compare expression of checked genes

Potri.002G221000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.