Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05120 1423 / 0 Nucleoporin, Nup133/Nup155-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001170 [exp] 1676 / 0 AT2G05120 1449 / 0.0 Nucleoporin, Nup133/Nup155-like (.1.2) Lus10001742 [exp] 1671 / 0 AT2G05120 1436 / 0.0 Nucleoporin, Nup133/Nup155-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03177 [poplar] [flax] Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal CL0186 [poplar] [flax] Beta_propeller PF08801 [poplar] [flax] Nucleoporin_N Nup133 N terminal like
Representative CDS sequence Show only first row Show all	>Potri.002G221300.3 pacid=42779160 polypeptide=Potri.002G221300.3.p locus=Potri.002G221300 ID=Potri.002G221300.3.v4.1 annot-version=v4.1 ATGTTCTCTCCAGGAATTAAAAGATCCAGCAATCGAAAAGCAGCAGCAGCACCTGACAATAATTCAATCCCTAATCGCCCTGCCACCGGCACTCCCGCTC CTTGGGCTCCTCGCCTCTCAGTTCTCGCCAGAACTCAATTGACGAAAAAAAGTGAAGAAAAAGCTAGTGATGCTGATCCAATTAAGCCCGTGTATGTTGG AGAGTTTCCGGAAGTAGTTCGTGATGAACAAGCCAACTTTCTGCGCAGCCACATTCCTGGTGATGCATCTATATCTGGTGGAATGGATAAGGAGACGTGC CTTTCCTGGATCATTTGCAGAAATAGACTCTTTATCTGGAGTCACTTATCATCTTCACCTTCAAAAGATTGTGTTGTTCTTCAACTTCCTTTAGATTGTT TAGATGATGGAGCTCATAGCAATAGCGGCTATCACGGCACAAATTGGCTGCTTTGTTTTCTCAACTGGGATCCCACATCCAGGGGAAGGAATAAAGCTGT ACAAAGTTGCAAGTCTGCTGGTGTGGTATTGTGTAACCAAAAAACTCGAGCTGTTACATACTGGCCTGACATTTACAATGAAGGCGGATCTGTTCCAGTT ACTTGTATGTTGTCTTCTGATGAATCGGAGGTGACTTCATTCTCTGTTGATGGGAAGAGCACCCCTAATCGGCGGTCTGCAATTAATACAATGGGATCCA ATTCTTTTAATTCTTTGATTGCTTGTGCACGTCCTGCTAGCCAGCATGTTTCTGTTGCCTTGGCTTGTAGTTCTAATGGTGCGCTGTGGCGCTTTTATTG CACCCCCACTGAAATTCAATGCAGTAAAGTGTATCAGGACACATTGTATTTATCCTCCCATGGCAGTGATGGTAGTCAATTTGTCAGGAGCAAGGGCTAT CCAAGGTCACTCATCTGGCGGTTTTCACCCCATTCCATGGACGATTCTGAACGGCAGTTTTTTTTATTGACTGATCATGAGATACAGTGTTTCAGTATAA AACTTAATCCTGATTCAAATGTGTCTAAGATGTGGTCTCATGAAATTGTTGGCACTGACAGTGATTTGGGCATTAAAAAGGATCTGGCTGGTCAGAAACG CATATGGCCTCTAGATGTACAGGTGGATGACCATGGCAAAGTCATCACAGTTCTTGTTGCCACTTTCTGCAAGGATCGTGTTAGCAGTTCCAGCTACACA CAATATTCTCTTCTGACCATGCAATATAAGTCGGGAGTCAACATTTCTTCTGATGTACATGAAAGGGTTTTGGAGAAAAAAGCCCCAATCCAAGTGATAA TCCCAAAAGCAAGAGTAGAAGATGAAGATTTCTTATTTTCTATGAGACTTAGAATAGGAGGCAAGCCTTCAGGCTCAACACTAATAATTTCTGGCGATGG AACAGCAACAGTCTCCCATTATTTTAGGAACTCTACACGTCTCTATCAGTTTGATCTACCTTATGATGCAGGAAATGTTCTAGATGCTTCAGCCCTTCCT TCTACAAATGACGGCGAAGATGGTGCATGGATTGTATTAACTGAGAAGGCTGGAATATGGGCAATACCAGAAAAGGCTGTTGTGCTTGGTGGAGTTGAAC CACCTGAGAGAAGCTTGTCGCGTAAAGGGAGCTCAAATGAAGGGTCTACACTAGAAGAGAGAAGAAACCTCACGTTTGCAAGCAATGTTGCTCCTAGAAG GGTAAGTTCTGAAGCAGGGGATTCTGGTGATAGAAAAAAGGCTGTTATGAATAGGATTTCACGCCGAACTTCGCATGATGAAGAATCAGAGGCTTTACTT GGTCAGCTTTTCCATGATTTTCTGTTAACTGGGCAAGTCGATGCCTCATATGAAAAGCTTCAAAGTTCTGGGGCTTTTGAAAGGGATGGAGAAACAAATG TTTTCACCCGCACAAGCAAATCGATCATTGACACCTTAGCTAAACACTGGACAACCACCAGAGGTGCTGAAATTTTGGCTATGACCATGGTATCCAACCA ACTCATGGATAAGCAGGAAAAGCATCAACGATTTTTACAGTTTCTTGCTCTATCAAAATGCCATGAGGAGCTATGCACTAAACAGAGACAGTCTTTGCTA ACAATCATGGAACATGGAGAAAAACTTTCTGGAATGATTCAACTGAGAGAACTGCAAAACACAATTAGCCAGAACAGGTCAAATATGAGCGGCTCCCCAC ATTCCAGTTCAGAAGCTCAACTTTCAGGTGCACTATGGGATCTAATTCAGTTAGTTGGTGAAAGAGCCCGCCGCAATACAGTTCTTCTCATGGACAGAGA CAATGCTGAAGTGTTTTACAGTAAGGTTTCGGATCTTGAAGAAGTATTTTATTGCTTGCACAGCTACTTAACATACCTAATAAATGAAGAACAGCCTCAT GAGGCTCAGATCAAGAGGGCTTGTGAACTCTCAAATGCAGTTGTGTCTATAGTTCGTTCTGCTATGCTCTATAGAAATGAGCACCATATGTGGTATCCAC TATCCCAGGGCTTAACATCTTGGTATTGTCAACCTGTTGTGCGGAATGGGCTGTGGAGAATTGCTTCTTTCATGCTTCAGCTGTTAGATGGAACATCTGA ACTTGAACTTTCTGCAAAATCAGATTTATGTGCTCATCTAGAAGTACTGGCTGAAGTTCTACTTGAGGCATATGCTGGTGCTGTCACAGCTAAAGTTGAG CGAGGAGGAGAACACAAGGGGCTGCTAGATGAGTATTGGAATAGACGGGATTCCCTTCTTAACTCCCTCTACAAACAAGTGAAATATTTTGTGGAAGGCG GGCACCAGGTTTTAAATGTAAGAACTGATGAGCCAGATGAGGAAATCCTTAGAAAGCTAACTTCAAATTTGTTGTCAATTTCAAAAAGACATGAAGGGTA CAATACTATGTGGAGTATATGTTGTGACATCAACGATTCAGCGCTGCTCAGAAATCTTATGCACGACAGCATGGGACCAAAGGGAGGTTTCAGTTACTTC GTGTTTAAACAACTGTATGAAAAGAGGCAAATCTCAAAGCTTCTAAGACTTGGAGAAGAGTTCCAGGAAGAGCTATCTATTTTTCTGAAGCATCACCGAA ATCTGCTGTGGCTTCATGAATTGTTTCTGCATCAGTTTTCCTCAGCTTCTGAAACTCTTCATGTATTGGCCCTTTCTCAAGATGAGACCTCAATATCAGA AGCTGAAGAGACCACAGACCATGTGCAAAACAGATTTATAACCACACTGGCAGATAGAAAGCGTCTTTTGAACCTCTCAAAGATTGCTATCATGGCAGCA GGTAAGACTACTGACTCGGAGACAAAGATGAAGCGAATTGAAGCAGATTTGAAGATTTTGAAATTGCAGGAAGAAATTCTGAAAGTACTTCCTGCCAATG AAGCAAATCAATACGATGGACAGAGGCTCTTCCGTCCTGAAGAACTCATAGAGCTGTGCTTTAAAGTTCAAAACCCAGAGCTTGCATTGCGGGGCTTTGA TGTGTTTGCATGGACTAGCTCCTCATTTCGTAGAAGTCACAGAAACCTTCTGGAGGAGTGCTGGAAGAATGCTGCTGATCAGGATGACTGGGGTCAACTC CATCAAGCATCTAAAGATGAAGGGTGGAGTGATGAGGAAATCTTGCAGCAACTGAGAGATACAGTGCTCTTCCAGGCATCAAGCAGTTGTTATGGACCCA ACGCAGAAATCATCGATGAAGGTTTTGATGCTGTCTTGCCATTGAGAAAAGAAAACTCTGGAGTTTCAGCATTGGAAGATTTGGATTTCTCTGTAGAAGC AATACTGATGCAGCACAAGGATTACCCTGATGCAGGAAAGCTAATGCTGACAGCAATCATGTTAGGAAGTGTACATGACAATTCAAAAGTAGAAGAGAAT CCTTCTTCAATGGAGTAA
AA sequence Show only first row Show all	>Potri.002G221300.3 pacid=42779160 polypeptide=Potri.002G221300.3.p locus=Potri.002G221300 ID=Potri.002G221300.3.v4.1 annot-version=v4.1 MFSPGIKRSSNRKAAAAPDNNSIPNRPATGTPAPWAPRLSVLARTQLTKKSEEKASDADPIKPVYVGEFPEVVRDEQANFLRSHIPGDASISGGMDKETC LSWIICRNRLFIWSHLSSSPSKDCVVLQLPLDCLDDGAHSNSGYHGTNWLLCFLNWDPTSRGRNKAVQSCKSAGVVLCNQKTRAVTYWPDIYNEGGSVPV TCMLSSDESEVTSFSVDGKSTPNRRSAINTMGSNSFNSLIACARPASQHVSVALACSSNGALWRFYCTPTEIQCSKVYQDTLYLSSHGSDGSQFVRSKGY PRSLIWRFSPHSMDDSERQFFLLTDHEIQCFSIKLNPDSNVSKMWSHEIVGTDSDLGIKKDLAGQKRIWPLDVQVDDHGKVITVLVATFCKDRVSSSSYT QYSLLTMQYKSGVNISSDVHERVLEKKAPIQVIIPKARVEDEDFLFSMRLRIGGKPSGSTLIISGDGTATVSHYFRNSTRLYQFDLPYDAGNVLDASALP STNDGEDGAWIVLTEKAGIWAIPEKAVVLGGVEPPERSLSRKGSSNEGSTLEERRNLTFASNVAPRRVSSEAGDSGDRKKAVMNRISRRTSHDEESEALL GQLFHDFLLTGQVDASYEKLQSSGAFERDGETNVFTRTSKSIIDTLAKHWTTTRGAEILAMTMVSNQLMDKQEKHQRFLQFLALSKCHEELCTKQRQSLL TIMEHGEKLSGMIQLRELQNTISQNRSNMSGSPHSSSEAQLSGALWDLIQLVGERARRNTVLLMDRDNAEVFYSKVSDLEEVFYCLHSYLTYLINEEQPH EAQIKRACELSNAVVSIVRSAMLYRNEHHMWYPLSQGLTSWYCQPVVRNGLWRIASFMLQLLDGTSELELSAKSDLCAHLEVLAEVLLEAYAGAVTAKVE RGGEHKGLLDEYWNRRDSLLNSLYKQVKYFVEGGHQVLNVRTDEPDEEILRKLTSNLLSISKRHEGYNTMWSICCDINDSALLRNLMHDSMGPKGGFSYF VFKQLYEKRQISKLLRLGEEFQEELSIFLKHHRNLLWLHELFLHQFSSASETLHVLALSQDETSISEAEETTDHVQNRFITTLADRKRLLNLSKIAIMAA GKTTDSETKMKRIEADLKILKLQEEILKVLPANEANQYDGQRLFRPEELIELCFKVQNPELALRGFDVFAWTSSSFRRSHRNLLEECWKNAADQDDWGQL HQASKDEGWSDEEILQQLRDTVLFQASSSCYGPNAEIIDEGFDAVLPLRKENSGVSALEDLDFSVEAILMQHKDYPDAGKLMLTAIMLGSVHDNSKVEEN PSSME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	0	1
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	1.73	0.8372
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	3.31	0.7898
AT3G23940			dehydratase family (.1.2)		Potri.003G176600 [exp]	3.46	0.8104
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	3.74	0.7967
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	4.24	0.7703
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	5.19	0.8208
AT5G23690			Polynucleotide adenylyltransfe...		Potri.015G104300 [exp]	5.83	0.7718
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	7.34	0.7982
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Potri.014G160300 [exp]	9.32	0.7546
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	10.39	0.7919

Compare expression of checked genes

Potri.002G221300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.