Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48160 811 / 0 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 761 / 0 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT3G63500 267 / 3e-79 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 262 / 1e-78 Protein of unknown function (DUF1423) (.1) AT5G57380 60 / 4e-09 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 54 / 2e-07 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18880 45 / 0.0001 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164800 [exp] 1056 / 0 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 297 / 1e-88 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 285 / 5e-86 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 283 / 1e-85 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 281 / 8e-83 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G091500 [exp] 49 / 9e-06 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.010G086600 [exp] 45 / 0.0002 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.006G167800 [exp] 45 / 0.0002 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012327 [exp] 979 / 0 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 974 / 0 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 288 / 3e-85 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 256 / 9e-74 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10030770 [exp] 226 / 1e-69 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10013248 [exp] 194 / 4e-56 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10030769 [exp] 64 / 5e-12 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10010550 [exp] 61 / 2e-09 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10028170 [exp] 53 / 5e-07 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 53 / 6e-07 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF07227 [poplar] [flax] PHD_Oberon PHD - plant homeodomain finger protein CL0390 [poplar] [flax] PF16312 [poplar] [flax] Oberon_cc Coiled-coil region of Oberon
Representative CDS sequence Show only first row Show all	>Potri.002G221500.3 pacid=42778866 polypeptide=Potri.002G221500.3.p locus=Potri.002G221500 ID=Potri.002G221500.3.v4.1 annot-version=v4.1 ATGCTTCCTCCACGACAGCAACCTTATACAACTGGACTACAAACATCACTGTCCTTGGTGTCTTCGGATCTTCACTTGTCCCCTGACGCACAGGAACCAA GATCAAATTCTGATAATATTCGTGAATCTCTTACAGAAAGTGCTAGTTCACAAGAAACTTGGCCTACTGTTGATGCCATGATGAAAAAGAAGATGGAGAA TGACAAGGCGGATAATGATTGCCCTGGACAGTCCATCATTCGTCGCGTCTCAGGTGCAGATAAGATATCTTTTCGTGACATAGCTGGGGAACGAGTTGAC ATGATCTCTGAAAAGATGCAACATTTACCTGACGACTTTCTTGATGAGCTAAAGAATGGTCTTCGGGTTATGCTTGAAGGAAGCGGTGGTTCACAGCACA GAGAGGAATTTTTGATTTTGCAGAAGCTTGTTCATAATAGGTCTGATTTGACAGCAAAGACTTTGATTAGAGCACACCGAGTACAGCTAGAAATACTTGT TGCAATAAACACTGGAATTCAGGCATTTTTGCATCCAAGTATTAGTCTCTCCCAAACTTCCCTGATTGAGGTCTTCGTGTTTAAGAGATGCAGAAATATA GCATGCCAAAACCAGCTTCCAGCTGATGACTGTACCTGCGAAATATGTGCCAACAAAAGCGGTTTCTGCAATCTCTGCATGTGTGTGATCTGTAACAAGT TTGATTTTGAAGTGAATACATGCCGTTGGATTGGTTGCGATTTGTGTTCTCATTGGACTCACACAGATTGTGCTATTCGTGATGGACAAATTTGTATGGG CCCGTCTGTTAAGAGTGGAGCTGGCCCAACTGAAATGCTTTTCCGTTGCCGAGCCTGCAATCGAACATCTGAGCTCTTGGGGTGGGTGAAAGATGTTTTC CAACACTGTGCACCAGCATGGGAACGAGAGGCTTTAACAAGGGAACTTGATTTTGTTAGTAGAATCTTCCGAGGAAGTGAAGACCCTAGAGGGAGGAAAC TCTTTTGGAAGTGCGAAGAACTTATTGAGAAAATGAAGGGTGGATTTGCAGAGTCAACAGCTTGCAGTGTGATATTGATGTTCTTCCAAGAGCTTGAGGT GGACTCTCCAAAGAGCCTGGAAAATGGGGAGGGTGGGAGGCTAATAGCCCCACAGGAGGCATGTAACCGAATTGCTGAAGTGGTGCAAGAGGCCATAAGG AAGATGGAGATGGTGGCTGATGAGAAGATGAGAATGTTTAAGAAAGCACGCATGGCTCTTGAGGCATGCGACCATGAGCTGGAGGAAAAGGCCAAGGAAG TGGCAGAACTAAAGCTAGACAGGCAAAAAAAGAAGCTACAGATAGAAGAGCTAGAGAGAATTGTGAGGCTTAAGCAGGCAGAGGCTGACATGTTCCAGCT CAAAGCCAATGAGGCAAAGCGAGAGGCTGAGAGGCTGCAGAGAATTGCGCTTGCTAAGACGGACAAATCAGAGGAAGAATATGCTAGCAGTTACCTCAAG CTACGTTTAAGTGAAGCTGAGGCAGAGAAGCAATATCTATTTGAGAAGATTAAGCTGCAGGAGAGTTCACGTGCATCACAAAGCAGTGGTGGGGCTGACC CTTCACAGGTGTTGGCATATTCCAAAATCCATGAAATTCTTCATGGGTACAATGTCCCCCCAAAGACAGAAGCACAGCCAAACGATCGCCACCATTTCAG GACAAATCCCTGA
AA sequence Show only first row Show all	>Potri.002G221500.3 pacid=42778866 polypeptide=Potri.002G221500.3.p locus=Potri.002G221500 ID=Potri.002G221500.3.v4.1 annot-version=v4.1 MLPPRQQPYTTGLQTSLSLVSSDLHLSPDAQEPRSNSDNIRESLTESASSQETWPTVDAMMKKKMENDKADNDCPGQSIIRRVSGADKISFRDIAGERVD MISEKMQHLPDDFLDELKNGLRVMLEGSGGSQHREEFLILQKLVHNRSDLTAKTLIRAHRVQLEILVAINTGIQAFLHPSISLSQTSLIEVFVFKRCRNI ACQNQLPADDCTCEICANKSGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSVKSGAGPTEMLFRCRACNRTSELLGWVKDVF QHCAPAWEREALTRELDFVSRIFRGSEDPRGRKLFWKCEELIEKMKGGFAESTACSVILMFFQELEVDSPKSLENGEGGRLIAPQEACNRIAEVVQEAIR KMEMVADEKMRMFKKARMALEACDHELEEKAKEVAELKLDRQKKKLQIEELERIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLK LRLSEAEAEKQYLFEKIKLQESSRASQSSGGADPSQVLAYSKIHEILHGYNVPPKTEAQPNDRHHFRTNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	0	1
AT4G16580			Protein phosphatase 2C family ...		Potri.014G042800 [exp]	2.00	0.8315
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	3.46	0.8675
AT3G01860			unknown protein		Potri.001G332500 [exp]	3.46	0.8263
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	6.16	0.8423
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	6.70	0.8268
AT2G24530			unknown protein		Potri.001G037500 [exp]	8.36	0.8194
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	9.48	0.8079
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	10.67	0.8343
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	13.49	0.8263
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	18.24	0.8207

Compare expression of checked genes

Potri.002G221500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.