Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04880 255 / 4e-81 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G26640 237 / 6e-74 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G03340 202 / 4e-60 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT2G38470 191 / 4e-56 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26440 189 / 8e-55 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT5G07100 176 / 2e-53 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G37260 175 / 1e-51 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G30250 173 / 2e-50 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G30935 160 / 7e-45 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT1G13960 131 / 6e-34 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164300 [exp] 559 / 0 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.011G087900 [exp] 248 / 3e-77 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 243 / 3e-75 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 211 / 7e-62 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 205 / 1e-60 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 201 / 7e-60 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.013G153400 [exp] 202 / 1e-59 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.008G091900 [exp] 199 / 3e-59 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G472800 [exp] 203 / 4e-59 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006368 [exp] 330 / 1e-109 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10012322 [exp] 304 / 6e-101 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10016595 [exp] 248 / 4e-77 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 240 / 7e-74 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 231 / 3e-71 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 224 / 5e-70 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 199 / 1e-59 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10001265 [exp] 199 / 4e-59 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10015377 [exp] 199 / 1e-58 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 191 / 8e-58 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G221600.1 pacid=42779619 polypeptide=Potri.002G221600.1.p locus=Potri.002G221600 ID=Potri.002G221600.1.v4.1 annot-version=v4.1 ATGGTCTCGTCAGAGGAAGTTTCTCCCAAGGAATTGCAGAAAAGACAGAGCCTAGATGGAGGGACTGACACTGCACAACAGACCCGTGGCAGTGGAGGTG ATGCTTCACAACAAGAAGGAATTCCTCCTTCAAATGCCCCTGAGAAACGTTTCGAGAATACTGGGGGGCGTATATTGCAGTTAGACAAAGAAGGAAGTGT TTCTTCCTTAACACCACGGAAATTGTCACATACCCCTGGCAGTGATCTCCATTCCTTGCAATCTGGTCAGGAAAGATGGAGTCCTTCTATCATGCGGGAA AAAGTGTCAGAGGATGGATATCGCTGGCGAAAATATGGGCAGAAACTTGTTAAAGGAAATGAATTTATACGGAGCTATTACAAATGTACACATCCAAGTT GCCAAGTGAAAAAGCAATTGGAGTGCTCACATGATGGGAAGCTTGCTGATATCGTTTACATTGGTGAGCATGAGCATCCCAAACCTCAACTTAACCTCCC ACAAGCAGTTGGTTGCGACCTGTCCACTGTTGAAGAAAAACCTGATAATCTTTTACTGACTGCTGTTGAAGAAAGTCAGGCACCTAATCCGATTGAGCCA ACAACTACCTCTCAGATTTCTACTGTTACATCCAGCGAGTATGTGAAGCGTGTGCTATCAGAACCAAATAGGATAAGGGATGAGATTGATGATGATCAAC GCTCAAAACAACGGAAGAAAGGTAACTGTAATGATGATTCTACTCCTTTAGATAAGCCAACTGGTGAGCCACGTCTTGTCATTCAAACAAAATGCGAGGT TGACACTGTCAATGATGGGTATCGTTGGCGTAAATATGGGCAGAAATTGGTTAAAGGCAATCCAAATCCCAGGAGCTACTACAGGTGTTCCAGTCCCGGA TGTCCAGTTAAGAAACATGTAGAGAGGGCATATAATGACCCAAAATTAGTTATAACCAGCTATGAGGGACAACATGATCACGATATGCCTCCTTCGAGGA CTGTTGCTCAAAACACAACTGGTCTCAACACTTGTACAACTACCATCCAGAATGGCGTGTCAGGTGCAAAATCAGGAGAAAGTGATGCCATCTCCCATTT CCCATGA
AA sequence Show only first row Show all	>Potri.002G221600.1 pacid=42779619 polypeptide=Potri.002G221600.1.p locus=Potri.002G221600 ID=Potri.002G221600.1.v4.1 annot-version=v4.1 MVSSEEVSPKELQKRQSLDGGTDTAQQTRGSGGDASQQEGIPPSNAPEKRFENTGGRILQLDKEGSVSSLTPRKLSHTPGSDLHSLQSGQERWSPSIMRE KVSEDGYRWRKYGQKLVKGNEFIRSYYKCTHPSCQVKKQLECSHDGKLADIVYIGEHEHPKPQLNLPQAVGCDLSTVEEKPDNLLLTAVEESQAPNPIEP TTTSQISTVTSSEYVKRVLSEPNRIRDEIDDDQRSKQRKKGNCNDDSTPLDKPTGEPRLVIQTKCEVDTVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPG CPVKKHVERAYNDPKLVITSYEGQHDHDMPPSRTVAQNTTGLNTCTTTIQNGVSGAKSGESDAISHFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	1.00	0.9384
AT5G17370			Transducin/WD40 repeat-like su...		Potri.003G155900 [exp]	1.73	0.8986
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	2.82	0.8916	CCSPK5.3
AT4G20325			unknown protein		Potri.006G280600 [exp]	4.24	0.9075
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G125951 [exp]	7.07	0.8821
AT2G34930			disease resistance family prot...		Potri.012G034600 [exp]	7.87	0.8365
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	9.94	0.8779
AT4G10320			tRNA synthetase class I (I, L,...		Potri.007G126501 [exp]	11.66	0.8534
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.010G139100 [exp]	11.95	0.8728
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	12.24	0.8767

Compare expression of checked genes

Potri.002G221600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.