Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07800 315 / 3e-110 Thymidine kinase (.1) AT5G23070 301 / 4e-104 Thymidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G009951 [exp] 327 / 7e-114 AT3G07800 292 / 7e-100 Thymidine kinase (.1) Potri.006G015800 [exp] 325 / 2e-113 AT5G23070 306 / 8e-105 Thymidine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012347 [exp] 330 / 6e-116 AT3G07800 303 / 4e-105 Thymidine kinase (.1) Lus10039055 [exp] 317 / 5e-110 AT5G23070 309 / 9e-106 Thymidine kinase (.1) Lus10038804 [exp] 310 / 4e-101 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006394 [exp] 198 / 2e-64 AT3G07800 178 / 2e-56 Thymidine kinase (.1) Lus10016925 [exp] 59 / 6e-12 AT5G23070 58 / 1e-11 Thymidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00265 [poplar] [flax] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G222300.2 pacid=42779025 polypeptide=Potri.002G222300.2.p locus=Potri.002G222300 ID=Potri.002G222300.2.v4.1 annot-version=v4.1 ATGGCTGCTTTGACTTCGATTAACGGTGGCCGCTGTGAGGCCGGTGAAGTACATGTCATCATTGGCCCCATGTTTGCTGGCAAAACCACCGATTTACTCC GTCGTATCGAATCTGAGAGCAGCAGTGGCAGAAATGTGGCAATGATAAAATCAAGCAAGGACACAAGATATGCAAACGATTCGGTGGTCACACATGATGG CTTGAAATTTCCTTGCTGGTCTTTGCCAGATCTCACCTCTTTCCATCACAAGCTTGGAGATGATGAATATCACAAGCTTGACGTGATTGGCATTGATGAG GCTCAATTTTTTGAAGATCTTTATGAATTCTGTTGCAAGGCTGCTGATCATGATGGGAAAACTATAATTGTAGCTGGCCTTGATGGGGATTATTTGAGGA GGAGCTTCGGATCTGTGCTTGATGTAATACCTCTTGCTGATACGGTAACAAAGCTGACTGCAAGGTGTGAACTTTGTGGCAAGCGAGCCTTCTTTACCTT GAGGAAGACAGCAGAGACCCAGACAGAATTGATTGGAGGATCTGATGTCTACATGCCTGTTTGCCGCCAGCACTATGTCAGTGGGCAAGCAGTCATAGAA TCAACAAGGAACGTCCTTGAATCCTATAAGGTTTCCCACTGA
AA sequence Show only first row Show all	>Potri.002G222300.2 pacid=42779025 polypeptide=Potri.002G222300.2.p locus=Potri.002G222300 ID=Potri.002G222300.2.v4.1 annot-version=v4.1 MAALTSINGGRCEAGEVHVIIGPMFAGKTTDLLRRIESESSSGRNVAMIKSSKDTRYANDSVVTHDGLKFPCWSLPDLTSFHHKLGDDEYHKLDVIGIDE AQFFEDLYEFCCKAADHDGKTIIVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCELCGKRAFFTLRKTAETQTELIGGSDVYMPVCRQHYVSGQAVIE STRNVLESYKVSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07800			Thymidine kinase (.1)		Potri.002G222300 [exp]	0	1
AT4G15140			unknown protein		Potri.006G008000 [exp]	3.46	0.9035
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	4.89	0.9069
AT1G07790		HTB1	Histone superfamily protein (....		Potri.010G231300 [exp]	6.92	0.8884
AT2G42110			unknown protein		Potri.016G045700 [exp]	7.48	0.8800
AT4G18590			Nucleic acid-binding, OB-fold-...		Potri.010G239200 [exp]	8.06	0.8644
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Potri.005G040800 [exp]	8.48	0.8566
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	11.35	0.8924
AT5G65360			Histone superfamily protein (....		Potri.005G233900 [exp]	12.24	0.8775
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Potri.016G070800 [exp]	12.32	0.8779
AT5G65360			Histone superfamily protein (....		Potri.002G028800 [exp]	12.36	0.8776

Compare expression of checked genes

Potri.002G222300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.