Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 439 / 6e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 321 / 1e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 311 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 303 / 2e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 236 / 4e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 230 / 1e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 180 / 5e-52 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 173 / 2e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 160 / 8e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 156 / 1e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161600 [exp] 672 / 0 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 501 / 2e-175 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 487 / 9e-170 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 485 / 4e-169 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 469 / 9e-163 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G258600 [exp] 259 / 6e-82 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 260 / 1e-81 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 259 / 2e-81 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 250 / 2e-78 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043168 [exp] 442 / 4e-152 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 442 / 5e-152 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 437 / 5e-150 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 437 / 7e-150 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 435 / 1e-148 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 427 / 8e-147 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 413 / 2e-140 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 400 / 6e-136 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 348 / 3e-117 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 249 / 3e-78 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G222400.1 pacid=42776803 polypeptide=Potri.002G222400.1.p locus=Potri.002G222400 ID=Potri.002G222400.1.v4.1 annot-version=v4.1 ATGCAATCTGACAGTGGCAAGCTATTCATTGGTGGAATTTCATGGGACACCAATGAAGAAAGGCTCAAGGACTATTTTCAATCTTTTGGGGAGGTAGTAG AGGCTGTGATAATGAAGGATCGCACCACAGGGCGTGCCCGTGGATTTGGCTTTGTTGTCTTCTCTGACCCATCTATTGCAGAGAGAGTCATTAAAGAAAA ACACAGCATTGATGGCAGAATGGTTGAAGCAAAAAAGGCTGTTCCCAGGGATGATCAGAACATGCTGAGCAGAAACAGTGGCGGTAGCATCCATGGTTCT CCTGGTCCAGGGCGTACAAAAAAGATCTTTGTAGGAGGCTTAGCATCCACTGTTACAGAAAGTGACTTTAGGAAATATTTTGACCAGTTTGGGCTCATCA CAGATGTTGTGGTGATGTATGATCATAACACACAGAGGCCAAGGGGATTTGGGTTCATCACTTATGATTCTGAGGAGGCAGTGGACAAAGTTTTGATGAA GACTTTTCATGAACTGAATGGCAAAATGGTTGAGGTTAAGCGAGCTGTTCCCAAAGAGTTATCACCCGGTCCCAGTCGCAGCCCACTTGGTGGATATAAC TATGGCCTAAATAGGGTTAATAGCCTCCTTAATGGCTACACTCAGGGATATACTCCAGGTGCAGTTGGAGGTTATGGACTTAGAATGGATGATAGGTTCA GTCTGGTTGCTGGTGGTCGAAGTGGTTTCCCTCCATTTGGTTCTGGTTATGGAATGGGTTTGAATTTTGAGCCAGCATTGAGCCCTAGTTATGGGGGGGA TGCAAATTTTAATAGCAATCTCAGCTATGGTCGAGGAATGAGTCCTTACTACATTGGTAATACCAATAACCTTGCTAGACCTGTAGGATATGATGGAGGT AATGGAGGAAATACTTCATTTTTCAGCTCGGCAACGAGAAATCTGTGGGGAAACGGGGGGCTCAATTATAACACCAACTCTACAAGTTCAAATGCATACA TGGGATCTGGAACTGGAAGCCTTGGAGGAAGCACCTTTGGCAACAGTGGAGCTAATTGGGGTTCTTCATCTCTTTCAGGTCAAGGTGGAGGAAATAATGT TTCTAATAGCAGTCTGAATTTTGGGCATGGAAGTGGTGAAAATAGTTTTGGTCAGGGCATGGGTAGTTATGCAAGAAATAGTGGGAATAATGGGGCCCCA ACATCATCATATGCTGCATCAAATGGTAGCTTTGATGGAGCATTTGCTGATCTTTATGGTGGTAATTCAGATTACAGGTACCCCACTTGGCAGCCGTCAA ATTCCGAGCGAGATGGATCTGGTTCTTTTGGTTATGGCCTCGGCAATACCACCTCTGATGTTCCAGTACAGAACTCTCCTGGTTATGCTGATGGTTATAG TGTTAATAAGAGACAGTCAAATAGAGGAATTGCTGCCTAG
AA sequence Show only first row Show all	>Potri.002G222400.1 pacid=42776803 polypeptide=Potri.002G222400.1.p locus=Potri.002G222400 ID=Potri.002G222400.1.v4.1 annot-version=v4.1 MQSDSGKLFIGGISWDTNEERLKDYFQSFGEVVEAVIMKDRTTGRARGFGFVVFSDPSIAERVIKEKHSIDGRMVEAKKAVPRDDQNMLSRNSGGSIHGS PGPGRTKKIFVGGLASTVTESDFRKYFDQFGLITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYN YGLNRVNSLLNGYTQGYTPGAVGGYGLRMDDRFSLVAGGRSGFPPFGSGYGMGLNFEPALSPSYGGDANFNSNLSYGRGMSPYYIGNTNNLARPVGYDGG NGGNTSFFSSATRNLWGNGGLNYNTNSTSSNAYMGSGTGSLGGSTFGNSGANWGSSSLSGQGGGNNVSNSSLNFGHGSGENSFGQGMGSYARNSGNNGAP TSSYAASNGSFDGAFADLYGGNSDYRYPTWQPSNSERDGSGSFGYGLGNTTSDVPVQNSPGYADGYSVNKRQSNRGIAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.011G088100 [exp]	1.00	0.9664
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	4.00	0.9639
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	4.24	0.9634
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Potri.012G061000 [exp]	4.79	0.9396
AT4G01400			unknown protein		Potri.002G179600 [exp]	5.19	0.9369
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	6.70	0.9566
AT3G06035			Glycoprotein membrane precurso...		Potri.010G033400 [exp]	6.92	0.9574
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	7.48	0.9526
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	7.48	0.9527
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.005G100800 [exp]	8.00	0.9217

Compare expression of checked genes

Potri.002G222400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.