Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) AT4G12560 119 / 1e-29 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 119 / 1e-29 F-box family protein (.1) AT3G23880 112 / 9e-28 F-box and associated interaction domains-containing protein (.1) AT3G16210 90 / 9e-20 F-box family protein (.1) AT5G49610 81 / 1e-16 F-box family protein (.1) AT4G22390 80 / 3e-16 F-box associated ubiquitination effector family protein (.1) AT2G27520 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) AT4G09190 78 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT5G15660 76 / 6e-15 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162600 [exp] 759 / 0 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 296 / 9e-98 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 178 / 7e-52 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037200 [exp] 160 / 5e-45 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 159 / 1e-44 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 157 / 1e-43 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 149 / 4e-41 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G129200 [exp] 143 / 2e-38 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 141 / 2e-37 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012355 [exp] 484 / 2e-171 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10006403 [exp] 421 / 6e-148 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 238 / 5e-74 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 212 / 3e-64 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10012356 [exp] 137 / 1e-37 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 126 / 2e-32 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038606 [exp] 124 / 8e-32 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10026789 [exp] 115 / 2e-30 AT3G07870 102 / 7e-26 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 112 / 6e-27 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10039024 [exp] 111 / 1e-26 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G223000.1 pacid=42778696 polypeptide=Potri.002G223000.1.p locus=Potri.002G223000 ID=Potri.002G223000.1.v4.1 annot-version=v4.1 ATGGTGATCATGGACTTGGATTTTGAAAGACATAGCAAAAGAAGAAAAACCAAGCTTGAAGATGATCCACAAACAACTGGAATGGAGCTTCTACCGAGGG AGATTGCTCAAGATATACTTTCAAGATTGCCCATCACTTCTTTGGTGAAATTCAAGTGTGTATGCCGAGCTTGGCGTGCCATGGCGCTGGACCCTGAGGT TGTAAATTTATATCTCTCTTGCTCAACTCAGGAAACAGATCCTTGCGTAATCCTTCACTGCGACTTTCCCATCAGAAACAATCTTTACTTCGTTGATTTC GCTGCCCACGAAGAAGAAAAGGAGAAGGTGAAAAGAATTCGAGCACCTTTTTCTTCTATGATGCCGGAGTTTGAAGTGGTAGGTTCCTGTAATGGTTTAC TATGCCTATCCGACTCGTTGTTCAACGATTCTCTTTATATCTATAATCCTTTCACGGGCAGATATAAAGAGCTGCCAAAATCCTTGCAGTATCCTGATCA AGAAGTGGTGTTTGGGTTCGGTTTCAATCCCAAGACTAATGAATACAAGGTAATTAGGATTGTGTATTATAGGAATGGGCATGGCAGATACCCTCGGTCA CGTAGAATCATTTATCCACTATCACAAGTCCAAATCTTAACACTAGGCTGCCCTGGATGGCGAAGTCTAGGCAAAGTGTCATACCGGCTAGTTCGCCGGG CATCAGAGACCCTGGTTAATGGAAGGCTTCACTGGGTTAGCCGACCGTGTAGAAACAAGCCTGCCCGCAGGCTGGTCTCATTCGACTTGACCGATGAGCA ATTCCGAGAAGTCCCGAAACCGGACTGCGGTGGCCTAAATAGGTGCGACTATCATCTAGCGGTTCTGAGAGGCTGTCTCTCTGTTGCTGTTTATTGCAAT TATGGAAGACTGGAGATCTGGGTCATGAAGGAGTACAATGTGAAGGAGTCATGGGTTAAAGAATACAATATTGGAGCGTACATGCCAAAGGGTTTGAAGC AAAATCTTGTCCGACCTCTGAAGATATGGAAGAATGCCTCAAATGGAAGGGCTGTTAGAGCTCTATGCGTGTTGAAGAATGGTGAAATCCTGCTGGAGTA TAAGAACAGAGCTCTGGTTTCTTATGACCCAAAGAAGGGAAAATTTAAGGATATCGACTTACAAGGGACGCCAAAATGGTTCCAAACAGTAGTTCATGTG GGCAGCCTGAACTGGATTGATACTCCAAGTGACTAG
AA sequence Show only first row Show all	>Potri.002G223000.1 pacid=42778696 polypeptide=Potri.002G223000.1.p locus=Potri.002G223000 ID=Potri.002G223000.1.v4.1 annot-version=v4.1 MVIMDLDFERHSKRRKTKLEDDPQTTGMELLPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLSCSTQETDPCVILHCDFPIRNNLYFVDF AAHEEEKEKVKRIRAPFSSMMPEFEVVGSCNGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTNEYKVIRIVYYRNGHGRYPRS RRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETLVNGRLHWVSRPCRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVYCN YGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVSYDPKKGKFKDIDLQGTPKWFQTVVHV GSLNWIDTPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07870			F-box and associated interacti...		Potri.002G223000 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	3.16	0.8469
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	5.74	0.8338
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.005G147400 [exp]	7.93	0.7908
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	10.58	0.8711
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	11.61	0.8693
AT2G27580			A20/AN1-like zinc finger famil...		Potri.004G184300 [exp]	12.92	0.7426
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	13.26	0.8686
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	14.35	0.7660
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	16.70	0.7693
AT1G49050			Eukaryotic aspartyl protease f...		Potri.015G053300 [exp]	18.89	0.8211

Compare expression of checked genes

Potri.002G223000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.