Plant FIBer expression Database

Potri.002G223100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G162800
[exp]
41 / 0.0001 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G223100.1 pacid=42777201 polypeptide=Potri.002G223100.1.p locus=Potri.002G223100 ID=Potri.002G223100.1.v4.1 annot-version=v4.1
ATGGCCACTGTTGAGGTTGTGTCAGCGCAGAATGCACTTGTAGAGGAAAAAAATGAACAACCAATCAAGGTTGAGACCACCACAGAAGAAGCGGTCACTG
CAGCACCAGAGGCAGTAACTCATGAAGAGCCAAAAGAAGCAGAGAAAGTTGCAGCATCTGAGGAGCCCGTGGCACCAGAGCCCGAGGCCCCAGCTGAAGC
TGAAACTAAAGAGGTGCTCGAAGAGAACAAGATCGCTGCAGAAGAGCCAACAGTACTAGAGAAAACTGAGGAGGAGACACCTAAGGAAACACCAGAGCCG
GTTGCTGAGGAGACAAAAGAGGAGCCGGAAGTACCCGTAGAGCCTGTTGTCGAGGAGGCTAAAGAGACTACAGAGCCTGGTGAGGCACCGGCAGAAGAAA
CGGAGGTTGCAGTCGAAGCCCCAAAGGAAGAAGAAGTAAAGGAAGAACAGAAGCCTGTTGAAACAGAGGAGAAGGTTGAAACAGAAACCCCAGTAGAAAA
GACTGAGTAA
AA sequence
>Potri.002G223100.1 pacid=42777201 polypeptide=Potri.002G223100.1.p locus=Potri.002G223100 ID=Potri.002G223100.1.v4.1 annot-version=v4.1
MATVEVVSAQNALVEEKNEQPIKVETTTEEAVTAAPEAVTHEEPKEAEKVAASEEPVAPEPEAPAEAETKEVLEENKIAAEEPTVLEKTEEETPKETPEP
VAEETKEEPEVPVEPVVEEAKETTEPGEAPAEETEVAVEAPKEEEVKEEQKPVETEEKVETETPVEKTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G223100
[exp]
0 1
Potri.018G139200
[exp]
1.73 0.8997
AT4G39410 WRKY ATWRKY13, WRKY1... ARABIDOPSIS THALIANA WRKY DNA-... Potri.005G086400
[exp]
9.89 0.8215 WRKY13.1
AT5G26330 Cupredoxin superfamily protein... Potri.010G089900
[exp]
11.22 0.8935
Potri.014G162800
[exp]
15.36 0.8153
AT4G27270 Quinone reductase family prote... Potri.001G410700
[exp]
19.28 0.8697 Pt-FQR1.1
AT4G27270 Quinone reductase family prote... Potri.004G028900
[exp]
19.49 0.8689
AT3G45230 hydroxyproline-rich glycoprote... Potri.009G013500
[exp]
19.59 0.8547
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Potri.001G302600
[exp]
19.79 0.8010
AT5G35730 EXS (ERD1/XPR1/SYG1) family pr... Potri.007G121400
[exp]
23.36 0.8652
AT5G11300 CYC2BAT, CYCA2;... CYCLIN A2;2, mitotic-like cycl... Potri.018G034100
[exp]
27.34 0.8439 Pt-CYC3.1

Potri.002G223100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.