Plant FIBer expression Database

Pt-ZW10.1 (Potri.002G223600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ZW10.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32900 972 / 0 ATZW10 centromere/kinetochore protein, putative (ZW10) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029956
[exp]
972 / 0 AT2G32900 860 / 0.0 centromere/kinetochore protein, putative (ZW10) (.1)
Lus10035358
[exp]
947 / 0 AT2G32900 842 / 0.0 centromere/kinetochore protein, putative (ZW10) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF06248 Zw10 Centromere/kinetochore Zw10
Representative CDS sequence
>Potri.002G223600.2 pacid=42777868 polypeptide=Potri.002G223600.2.p locus=Potri.002G223600 ID=Potri.002G223600.2.v4.1 annot-version=v4.1
ATGGACGCTCTCTTCGACGCAATCAACGTTCGAGACCTTCTCTCAACGAGTGATCTCAGGGACCCAACCGCACCCCTCTCCGCACCCGATCTCCGCCTGC
TCATAACCCGTCTCGAATCTCACTCTCTCCAAATCAAATCGAAAGTCAAATCCTACATCCTCGCTCACCACAGCGACTTCTCCTCTCTCTTCTCCCTCTG
CAACGACGCCGTTTCTCGAACCGACCAGATTAACCAGTGCCTATTAGATCTTCTAGCTCTGGTTTCCGATTCTCCGATTGATGGCGAGATTAGGGAGATT
GTTGAGGAGTTGAGTGGGAAGATGAAGGAGGCGAGGGAAAAGAGGGAAATATTGGATTTGGTGAGGATAATTGTGGGAATTAGTGAGAGGTTGGGAGGGA
TAAAAGAGGGAGTGAAGAATGGACGGCTGAGACTTGCGGCTGTTGATATTAGGGATTTGAAGAAGGTATTGAGGATTGGTGATGAGGAGGAGAGAGAGCC
TGTTGTGTATGGTTTGTTGAGGAAGGAGTGGCTCGATTGCTTCGAGGAGATTCAAGAGATGCTTGTGAAATTCGTGGAAAATGCAGTGCAGTTCGAGCCA
GATTCTAGTATTGTTCGAGTCAAGTATCGGTTGAGTGTTGATGGCATTGCTGGGGTTGTGGATCTCCACAGTGTTTTGGATTCAATGGAAGTGATTGGTA
TATTAGACTATGGGTTTGCTAAAGTGGCTGACCAAATGATCAAGCATGTCATCATTCCTGTTGTAAAGAAAGGATCATCCATTTCATCCATGGAAGATCT
GAAAGACGTCTCCAAAGAAATGACTGAGGCAATATTGAAAATACTATCAACAAGCAATCCAATGGTCGATGTGGATGGTGAGATCATCTATTCAAGGATT
ATTCAGGTTATAAACTTTGTTTGCAAGTGCATATGTTTTGAGAATCCTTCTTGGATTCGATGCTTTGGAAGGTTGACATGGCCAAGGATATCAGAACTTG
TTATTTCTAACTTTCTCTCCAAGGCTGTCCCTGAAGATGCTTCTAAACTTGCTGGCTTTCAGAAGATCATCAAAGACACATATGAGTTTGAAACTGCTTT
GAAGGAGATGGCATTTATTTCAGCATCTGATAGCACAGACCAAAAGTTGAGCAACTTTGCTGAAAATGTCGAGCTTCACTTTGCTTCTAGGAAGAAGATC
GAAATCTTGGCAAAGGCTAGAAATTTGCTTCTACAGTGTGACTTCACTATTCCTCAAGAATATACAAGAAAAGGTCATCCAATGAAGAATAGTGGGACAG
CTGTAAATTATTATGAACATGTTGTTGACTTGCTTTTTCTGTCCGAGAGGTGTTTGGTGTCCAAAGCAGCTACTCAACTGATGGATCTTGTACATCAGAC
ACTTAAGGACATTTGCTTGTCTTCTCCCAGAGTTGCATTGGAGTTCTATCATGCTGCCAGGGATGCTATCCTTCTCTATGAGGCTGTTGTTCCTGTCAAG
CTAGAAAGGCAGCTTGATGGAGTCAACCAGGTTGCTGTTCTCATGCACAATGACTGTTTCTATCTATCTCAAGAGATACTTGGACTGGCATTTGAGTATC
GATCAGACTTTCCGATTTCCATCAAGGAACATGCTGTTTTTGTTGATTTAGCTCCTCGATTTCAAGTAATGGCAGAGGAGATACTGCAGAGACAAATTCA
GCTCGTTATTTCTAATTTGAAAGAGGCCATAGATGGTGCTGATGGTTTTCAGAACACTCATCAGGTTCAGCAATTTGAATCAGCAAAATTTAGCATAGAT
CAGGTTGTTTTTATTCTTGAAAAAGTACATATTATCTGGGAGCCACTCTTGCTGCCATCTACTTACAAGAAAAGCTTGTGTATGGTTCTAGAGTCGGTTT
TTGCTAGAGTCACGAAAGACATACTCCTCCTAGATGATATGGCAGCTGAGGAAACATTACAGCTTCAAAGACTGATCCATTTGATGCTGGAAAGCATATC
ATCTTTAATGGAATCTCTGAGTACTGTCATTCAAAAGGAGAGGCCAGAAGAGTATCATACAAGTCTTGTAGATGATCTAATACCATCATTACGTAAAATC
CGTAAAGTTGCAGAACTTCTGGACATGCCTTTAAAATCCATTACAACAGCTTGGGAAAGTGGGGAACTCATCAGCATTGGGTTTACGATGCTAGAGGTAA
AAGATTTCATCAAAGCAATATTTACAGACTCCCCTCTGCGAAAAGAATGCCTATGGAGGATAGAAAACGTCGGCCTGTAA
AA sequence
>Potri.002G223600.2 pacid=42777868 polypeptide=Potri.002G223600.2.p locus=Potri.002G223600 ID=Potri.002G223600.2.v4.1 annot-version=v4.1
MDALFDAINVRDLLSTSDLRDPTAPLSAPDLRLLITRLESHSLQIKSKVKSYILAHHSDFSSLFSLCNDAVSRTDQINQCLLDLLALVSDSPIDGEIREI
VEELSGKMKEAREKREILDLVRIIVGISERLGGIKEGVKNGRLRLAAVDIRDLKKVLRIGDEEEREPVVYGLLRKEWLDCFEEIQEMLVKFVENAVQFEP
DSSIVRVKYRLSVDGIAGVVDLHSVLDSMEVIGILDYGFAKVADQMIKHVIIPVVKKGSSISSMEDLKDVSKEMTEAILKILSTSNPMVDVDGEIIYSRI
IQVINFVCKCICFENPSWIRCFGRLTWPRISELVISNFLSKAVPEDASKLAGFQKIIKDTYEFETALKEMAFISASDSTDQKLSNFAENVELHFASRKKI
EILAKARNLLLQCDFTIPQEYTRKGHPMKNSGTAVNYYEHVVDLLFLSERCLVSKAATQLMDLVHQTLKDICLSSPRVALEFYHAARDAILLYEAVVPVK
LERQLDGVNQVAVLMHNDCFYLSQEILGLAFEYRSDFPISIKEHAVFVDLAPRFQVMAEEILQRQIQLVISNLKEAIDGADGFQNTHQVQQFESAKFSID
QVVFILEKVHIIWEPLLLPSTYKKSLCMVLESVFARVTKDILLLDDMAAEETLQLQRLIHLMLESISSLMESLSTVIQKERPEEYHTSLVDDLIPSLRKI
RKVAELLDMPLKSITTAWESGELISIGFTMLEVKDFIKAIFTDSPLRKECLWRIENVGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32900 ATZW10 centromere/kinetochore protein... Potri.002G223600
[exp]
0 1 Pt-ZW10.1
AT2G43490 Ypt/Rab-GAP domain of gyp1p su... Potri.007G132900
[exp]
1.00 0.7904
AT5G50350 unknown protein Potri.008G012000
[exp]
2.44 0.7616
AT5G47660 Trihelix Homeodomain-like superfamily p... Potri.006G005300
[exp]
9.21 0.6964
AT3G23410 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXID... Potri.010G069100
[exp]
9.69 0.7702
AT5G61750 RmlC-like cupins superfamily p... Potri.015G109600
[exp]
11.48 0.7608
AT1G65430 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE... Potri.008G077100
[exp]
16.43 0.7389
AT4G36630 EMB2754 EMBRYO DEFECTIVE 2754, Vacuola... Potri.007G025700
[exp]
21.16 0.7353
AT3G53030 SRPK4 ser/arg-rich protein kinase 4 ... Potri.006G117800
[exp]
21.93 0.7078
AT1G79450 ALIS5 ALA-interacting subunit 5 (.1.... Potri.001G381500
[exp]
25.92 0.7129
AT3G51820 PDE325, ATG4, G... PIGMENT DEFECTIVE 325, UbiA pr... Potri.016G119400
[exp]
31.81 0.6829

Potri.002G223600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.