Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05000 300 / 1e-104 AtPFA-DSP1 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT2G32960 278 / 4e-95 AtPFA-DSP2 plant and fungi atypical dual-specificity phosphatase 2, Phosphotyrosine protein phosphatases superfamily protein (.1) AT4G03960 271 / 2e-93 AtPFA-DSP4 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G02800 207 / 6e-68 AtPFA-DSP3 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1) AT5G16480 199 / 5e-65 AtPFA-DSP5 plant and fungi atypical dual-specificity phosphatase 5, Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159100 [exp] 365 / 4e-130 AT1G05000 310 / 3e-108 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.004G002800 [exp] 289 / 2e-100 AT1G05000 286 / 4e-99 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.011G021100 [exp] 288 / 7e-100 AT4G03960 288 / 4e-100 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.013G086500 [exp] 200 / 2e-65 AT3G02800 296 / 2e-103 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031529 [exp] 322 / 3e-113 AT1G05000 304 / 2e-106 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10035333 [exp] 312 / 5e-109 AT1G05000 291 / 2e-100 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10015154 [exp] 308 / 2e-107 AT1G05000 298 / 3e-103 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10029991 [exp] 306 / 2e-106 AT1G05000 296 / 1e-102 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF03162 [poplar] [flax] Y_phosphatase2 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.002G224000.1 pacid=42780088 polypeptide=Potri.002G224000.1.p locus=Potri.002G224000 ID=Potri.002G224000.1.v4.1 annot-version=v4.1 ATGAAAATAGTCCACACCTCCGCCGCCAACGGTGATGACACCATCTACAAGACAATCGAAGTGGCTGTTATTGACCGACGCGATCTCACTCCACCTCCGG TGTTTCCTTTCCCTGTTGTCGGAGACGAACTTAATCTTATTCCACCTCTAAACTTTGCTATGGTAGATAATGGCATCTTTAGGTCTGGTTTTCCTGACTC TGCTAATTTCTCTTTTCTCCAAACACTCGGCCTCCGCTCTATCATATGTTTATGTCCCGAGCCATATACAGAGGCGACCACGGAGTTTCTAAAGGATGGT GGAATCAGGCTCTATCAGTTTGGGATCGAGAGTTATAAGGAGCCATTCGTAAACATCCCGCAGGATACAATTCGTGAAGCACTTCAAGTGGTCCTTGATG TGAAGAATCATCCAATTCTGATTCATTGTAAACGGGGAAAGCACCGAACTGGTTGTCTTGTTGGTTGCCTTAGAAAATTGCAAAAGTGGTGTCTCTCATC CATATTTGATGAGTATCAGCGGTTTGCTGTTGCAAAGGCTAGAGTTTCAGATCAAAGATTTATGGAGTTGTTTGATGTTTCTACCTTAAAGCATTTGCCA ATGTCATTTTCATGCTTGAAGAGGTAA
AA sequence Show only first row Show all	>Potri.002G224000.1 pacid=42780088 polypeptide=Potri.002G224000.1.p locus=Potri.002G224000 ID=Potri.002G224000.1.v4.1 annot-version=v4.1 MKIVHTSAANGDDTIYKTIEVAVIDRRDLTPPPVFPFPVVGDELNLIPPLNFAMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYTEATTEFLKDG GIRLYQFGIESYKEPFVNIPQDTIREALQVVLDVKNHPILIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAVAKARVSDQRFMELFDVSTLKHLP MSFSCLKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.002G224000 [exp]	0	1
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	3.46	0.9020
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	8.48	0.8761
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	12.64	0.8793
AT2G31945			unknown protein		Potri.009G024300 [exp]	15.09	0.8503
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	16.12	0.8550
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	18.70	0.8439
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	19.28	0.8685
AT2G38790			unknown protein		Potri.010G235400 [exp]	19.39	0.8474
					Potri.004G056374 [exp]	21.21	0.8470
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.010G063500 [exp]	21.54	0.7938	Pt-AMT1.4,1

Compare expression of checked genes

Potri.002G224000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.