Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1) AT4G22250 108 / 1e-29 RING/U-box superfamily protein (.1) AT1G62370 107 / 2e-29 RING/U-box superfamily protein (.1) AT3G25030 98 / 3e-25 RING/U-box superfamily protein (.1.2) AT4G13100 96 / 2e-24 RING/U-box superfamily protein (.1.2.3.4.5) AT3G07120 77 / 6e-17 RING/U-box superfamily protein (.1) AT2G34920 47 / 2e-06 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT3G58720 46 / 3e-06 RING/U-box superfamily protein (.1.2) AT3G06140 44 / 2e-05 RING/U-box superfamily protein (.1) AT1G63900 43 / 3e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158900 [exp] 221 / 2e-74 AT4G22250 103 / 2e-27 RING/U-box superfamily protein (.1) Potri.004G003101 [exp] 108 / 1e-29 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.002G243800 [exp] 97 / 7e-24 AT3G07120 191 / 3e-57 RING/U-box superfamily protein (.1) Potri.007G081900 [exp] 48 / 1e-06 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.013G025400 [exp] 45 / 1e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.005G083800 [exp] 45 / 1e-05 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.014G159300 [exp] 45 / 1e-05 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G156400 [exp] 44 / 2e-05 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.005G093000 [exp] 44 / 3e-05 AT5G23110 5932 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035335 [exp] 120 / 2e-35 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10029993 [exp] 119 / 4e-35 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10015152 [exp] 119 / 3e-34 AT4G03965 123 / 1e-35 RING/U-box superfamily protein (.1) Lus10025921 [exp] 81 / 2e-18 AT3G07120 117 / 3e-31 RING/U-box superfamily protein (.1) Lus10038180 [exp] 81 / 3e-18 AT3G07120 122 / 6e-33 RING/U-box superfamily protein (.1) Lus10002487 [exp] 45 / 2e-05 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10016817 [exp] 44 / 3e-05 AT2G22010 1406 / 0.0 related to KPC1 (.1.2) Lus10034030 [exp] 44 / 4e-05 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10035857 [exp] 44 / 5e-05 AT2G22010 1667 / 0.0 related to KPC1 (.1.2) Lus10027994 [exp] 43 / 5e-05 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G224200.1 pacid=42777986 polypeptide=Potri.002G224200.1.p locus=Potri.002G224200 ID=Potri.002G224200.1.v4.1 annot-version=v4.1 ATGAACAGCTTAGACGGGATCACAATGACGGGGTGGAAGAATCTAAAGCAACGGCTGTCATTCAAGGGCCTTGGTGGTTGCTGCGGGAGCACAAGCTGGA GTTCCAGAAGTGAAACTCCAACCATGCCCTTCATCGATATGGAGGAGGAAGAAGAAGAAGAGAGTGCCATTATGCAGAACCAAGCACAAGGAGGAGGGTT TGCTGCAGCCCCAGGTGCAGGGATGAATCTGGCAATGGCATTAGCTGCTGAGCGCAATTCACGGGCTTCAAACGTCAAGACATTGATGAGATTGATTGAA GAAACGGACGGTGTTGATTGGAGGACGAAGAACAAGACTAATAAAAGTAGGAGGGACAAAGAACAGGAACAGGGACCAGAGAATGATTGGGTGTGCTGCG TGTGCATGGAGAGAAAGAAAGGCGCAGCTTTTATTCCATGTGGACACGCCTTTTGTAGGGTTTGTTCAAGAGAAATGTGGGTCAATCGAGGGTCTTGCCC CATCTGCAACCGTTCAATTCTCGACATCCTTGATATCTTTTAG
AA sequence Show only first row Show all	>Potri.002G224200.1 pacid=42777986 polypeptide=Potri.002G224200.1.p locus=Potri.002G224200 ID=Potri.002G224200.1.v4.1 annot-version=v4.1 MNSLDGITMTGWKNLKQRLSFKGLGGCCGSTSWSSRSETPTMPFIDMEEEEEEESAIMQNQAQGGGFAAAPGAGMNLAMALAAERNSRASNVKTLMRLIE ETDGVDWRTKNKTNKSRRDKEQEQGPENDWVCCVCMERKKGAAFIPCGHAFCRVCSREMWVNRGSCPICNRSILDILDIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03965			RING/U-box superfamily protein...		Potri.002G224200 [exp]	0	1
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	6.70	0.8735
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	8.48	0.8701
AT4G35930			F-box family protein (.1)		Potri.005G110200 [exp]	9.59	0.8772
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	10.48	0.8680
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.001G301800 [exp]	10.95	0.8639
					Potri.001G456700 [exp]	14.42	0.8087
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145600 [exp]	15.29	0.8464
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G134200 [exp]	15.87	0.8033
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.009G089200 [exp]	18.49	0.8747
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	18.70	0.8540

Compare expression of checked genes

Potri.002G224200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.