Plant FIBer expression Database

Potri.002G224300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31340 863 / 0 EMB1381 embryo defective 1381 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035336
[exp]
933 / 0 AT2G31340 827 / 0.0 embryo defective 1381 (.1)
Lus10029994
[exp]
930 / 0 AT2G31340 824 / 0.0 embryo defective 1381 (.1)
PFAM info
Representative CDS sequence
>Potri.002G224300.5 pacid=42777667 polypeptide=Potri.002G224300.5.p locus=Potri.002G224300 ID=Potri.002G224300.5.v4.1 annot-version=v4.1
ATGGTGAACAAATCATGGAAGATAATACCAAGACCATTACTCGAAACAATCTTAAACAACCACGCCCAGCACCACCGCGTCCCTCAGCCTCTCATTCTCC
ACGGCCCCCGTGGCGTCGGCAAAACCACCCTCTTCCTCGAACGTCTCCTTAAAGATTGGAACAAAGGCCCTCACATAACTGGCTATGTAGACTTTGCGCA
GTCAATCAAAGACCATCACCCTCAGCATAACAACTCCTACCCTTGGGCTTCTTGGTCTAGTTGTGATCCACCAACACTCTCCAATTGCAAAACCCAGCTC
GAAACTTGCCTTGAATCGATGACCCAGAAGGGAATCCAACTCGGAGCCATTACTTCCAGCCAAATATTCTCTACTCTCAACAAATGGCATCGCCTTGACA
CTGTCCTTCGTCGTATACTACTCCAAAACAATTCCAATATTGCTTTGAAATCGAGAAATGCTATTTCTAAGGTTTCAAGTTCGGTTCTTTGGGACCGGGC
AGTTTTTGCGCTATCTGCTCGATCAAATGCCAAAGAGATTGACGAGATTCTTGGGTTGGAAGAGAAAGGGAAGAGCTTGTCTGTGGAGGAGGCTTCGTAT
TTTAGAGAGGCGTTTGTGGCTTTGAGGTTGGCTAAGGAGGTTATTACAATGCAGCAAGGGTGGAGAGCCAGTGCCATTGCTCATTTGAACAGGACTGGTG
GGTTTTCGAGGTCGTTGGCCAATTCTTGTACTGATTGGCCTTGTTTGCTGCTCGAGTTGCTATCAAAAGCTGCTGAGATTGATTACTTTCAGCCGAAGCT
GGTTATAAACAATATTGAAGTTCTCAAAAAGGCTATTTTAGTGGATGATTCAATGGTTTCTGGACCAATGTATCATGACAGTCTGATATGGAGAATTGTT
GCATTGGGTGCAAATGAGAGATGCCTGCCCATTATGCTTGCGACATCTGATAGCTACTACTCATACCAGGCCTACTGGGATTTTGGATTTCCAGATATAT
TCATTTCCCGTGAGAACTTTGGATGGGCTCCACAAGAAGCTAAAATGCATATGGTTAATGATTACTTCAGTCAGTCAGAATGGACGGTGATTATTGAGGT
GCTTGGTCCAAACCCTCGACATCTGTTTGAGCTTTATGCTCTCAAACAAAGTAGCTATTATCAGAAGGTCCTTGAAGACAAGGCTAGCACATTTGAGGAT
ATTGTAGACGCATATTTAGCATATTTGCAGGTTACTGTGGTGAATCCTGCCATGGATAAAGCACTGGAATTCCTGCAAAAGTTTGCCAATGATGCAAAAA
GTGGAAAAATTCCAAAAGATAGATTACGTTTTGGTTCTCCTTGGAAGCATCCTTCAAAACTGGACGACCCTACTCAATGTCAGCAGTGGGCAAAGCTTCA
GCTGCTGGATTTTGTTCAATCTCTAATAAATACTGAATTTGGGGTAAATTACCTAGGTGATTGTAGCTTTGAGATATTTGATGATCCATGCACTGTTGCT
TTATTAGAGGTTGGTTTGCTCTATGCTCAACGCGATCCATCATTCATTCGCCCCATATCTATAGGTATTCAGAGATGTCTTGTGAGATGGCTTGTCCAGG
AACGGATGAAAATGAGTTTACAGAACCTGCTCCAATTTCTGTGGCAGCGAATTATACGTGGTCGTAGTTATCGTCATTTGATGTTACAAGTGGGCTACAA
ATAA
AA sequence
>Potri.002G224300.5 pacid=42777667 polypeptide=Potri.002G224300.5.p locus=Potri.002G224300 ID=Potri.002G224300.5.v4.1 annot-version=v4.1
MVNKSWKIIPRPLLETILNNHAQHHRVPQPLILHGPRGVGKTTLFLERLLKDWNKGPHITGYVDFAQSIKDHHPQHNNSYPWASWSSCDPPTLSNCKTQL
ETCLESMTQKGIQLGAITSSQIFSTLNKWHRLDTVLRRILLQNNSNIALKSRNAISKVSSSVLWDRAVFALSARSNAKEIDEILGLEEKGKSLSVEEASY
FREAFVALRLAKEVITMQQGWRASAIAHLNRTGGFSRSLANSCTDWPCLLLELLSKAAEIDYFQPKLVINNIEVLKKAILVDDSMVSGPMYHDSLIWRIV
ALGANERCLPIMLATSDSYYSYQAYWDFGFPDIFISRENFGWAPQEAKMHMVNDYFSQSEWTVIIEVLGPNPRHLFELYALKQSSYYQKVLEDKASTFED
IVDAYLAYLQVTVVNPAMDKALEFLQKFANDAKSGKIPKDRLRFGSPWKHPSKLDDPTQCQQWAKLQLLDFVQSLINTEFGVNYLGDCSFEIFDDPCTVA
LLEVGLLYAQRDPSFIRPISIGIQRCLVRWLVQERMKMSLQNLLQFLWQRIIRGRSYRHLMLQVGYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31340 EMB1381 embryo defective 1381 (.1) Potri.002G224300
[exp]
0 1
AT5G45140 NRPC2 nuclear RNA polymerase C2 (.1) Potri.015G003000
[exp]
2.82 0.8821
AT3G23330 Tetratricopeptide repeat (TPR)... Potri.001G186500
[exp]
5.29 0.8748
AT3G56690 CIP111 Cam interacting protein 111 (.... Potri.006G035000
[exp]
7.41 0.8416 Pt-CIP111.1
AT5G09840 Putative endonuclease or glyco... Potri.019G004000
[exp]
11.22 0.8446
AT5G58040 FIP1[V], ATFIP1... homolog of yeast FIP1 [V], hom... Potri.010G145150
[exp]
11.40 0.8418
AT2G39810 HOS1 HIGH EXPRESSION OF OSMOTICALLY... Potri.001G155200
[exp]
11.83 0.7995 Pt-HOS1.2
AT4G08210 Pentatricopeptide repeat (PPR-... Potri.002G087400
[exp]
12.96 0.8511
AT5G52630 MEF1 mitochondrial RNAediting facto... Potri.016G053500
[exp]
14.69 0.8451
AT1G68930 pentatricopeptide (PPR) repeat... Potri.010G136200
[exp]
17.17 0.8471
AT1G80810 Tudor/PWWP/MBT superfamily pro... Potri.003G181300
[exp]
17.37 0.7373

Potri.002G224300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.