Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05810 460 / 3e-156 ARM repeat superfamily protein (.1.2) AT2G45720 206 / 6e-59 ARM repeat superfamily protein (.1.2) AT5G50900 186 / 1e-51 ARM repeat superfamily protein (.1) AT1G61350 178 / 9e-49 ARM repeat superfamily protein (.1) AT1G01830 152 / 1e-39 ARM repeat superfamily protein (.1.2.3) AT2G28830 65 / 1e-10 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 61 / 2e-09 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G44900 48 / 2e-05 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G54850 48 / 2e-05 ATPUB14 plant U-box 14 (.1) AT2G23140 45 / 0.0001 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158700 [exp] 714 / 0 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.004G033800 [exp] 193 / 3e-54 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 191 / 1e-53 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 181 / 5e-50 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.002G153700 [exp] 181 / 5e-50 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 176 / 5e-48 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.014G076500 [exp] 176 / 6e-48 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.009G165900 [exp] 65 / 9e-11 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 56 / 7e-08 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029995 [exp] 400 / 4e-134 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10035337 [exp] 344 / 5e-114 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10029996 [exp] 253 / 4e-81 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10035338 [exp] 252 / 9e-81 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 168 / 6e-45 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10041369 [exp] 164 / 2e-43 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10002598 [exp] 109 / 6e-25 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10018423 [exp] 105 / 1e-23 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10040834 [exp] 53 / 7e-07 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 52 / 1e-06 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G224400.1 pacid=42778278 polypeptide=Potri.002G224400.1.p locus=Potri.002G224400 ID=Potri.002G224400.1.v4.1 annot-version=v4.1 ATGCCGGACCAAATGCATCCCACAACCGCCACCCCGGATCCACCACAAGAACAACCACCGGAAACACTCCTAAACCTAATAACAAACGTTCTCTCCCTCC TCCTCCTGTCCACCATTACCGTCCAATCCTTCATTGGACGGTGGCAGGTCCTTCGCCCTAAACTAACCTCTCTCCAGTCCTCTCTTTCCTCTCTCTCCGA TTCCCCTCTCTGGCCCCAAAACCCTCTTCTTCAGACTCTTCTCCCTTCTCTCCTCTCCACTCTCCAACGCCTCCTTTCCCTCTCTCACCAATGCTCTTCT ACCAGTTCCTTCCTTGGCGGTAAGCTCCTCTTTCAAAGCGACCTTGATATCGCCTCCTCGTCCCTCTCCAATCACCTCCACGACCTCGGTTTGCTTCTCA GATCTGGAGTGCTTCACCAATCCAATGCTATTATTCTGTCTCATCCAGGTCCCGGTTCTAACAAAGAGGAATTAGTCTTTTTTATCCACGACCTCTTCAC CAGATTACAAGTCGGTGGTGCTGAGTTCAAAAGGCCAGCATTGGAGTCACTTCTTCAGGTCCTAAATGAAGACCAAAAGTTAGCCAGTTTAGTTGCCAAG GAAGGAAATATTGGGTATTTGATTGGTTTGCTTGATTTTAACAATCAACCTTCCATTCGAGAACAAGCAGTTTCGGCTGTTTCAATTCTGGCTTCGTCCG ACGGTGAATCAAGAAAGATTATATTTGAAGAGGGAGGATTGGGACATTTATTGAGGGTTCTTGAAACAGGGTCAATGCCTGTTAGAGAAAAGGCTGCCAT TGCGATTGAAGCAATCACAGACGATCCTGATAATGGGTGGGCTATTTCAGCATATCGTGGTGTTTCAGTCTTGATTGAAGCGTGCCAATGTGGATCACAA GTGACACAGACACACGCAGTGGGTGCTATTCGAAATGTTGCAGGACTAGAGGATATCAGGATGGCTTTAGCAGAGGAAGGTGTTGTACCAGTTATATTTC ATTTGCTTGTTTCAGGTACTAGCGCTGCACAAGAAAAGGCAGCTGATTGTGTAGCAATACTAGCCTCTTCCGGGGAGTATTTTCGCACTTTGATAATACA AGAAAAGGGATTGCAGAGATTAATGTATTTGATTCAGGATTTGTCAAGTACTTCATGTACAATAGAACACATTTTACGTGCAATTAGCTCTCTCTCGGTA TCAGATTCTGTATCTCAGATTCTGTCATCATCAACTGCTCTCATTGTCCATCTCGGCGAGCTTATAAAACATGGAAACATAATTTCGCAGCAAATTTCAG CGTCTTTACTAGCTAATTTATCAATTAGTGATGGCAATAAGCGAGCTATCGCTAGCTGCATGGGTTCATTGGTAAAGCTGATGGAGTCACCTAAGCCAGT GGGTCTACAAGAGGCAGGAGCGCTTGCGTTGCTGTCATTGTTGACAGTCCGATGGAACAAGAAAGAATTGGCGAGGGATGAAAAGGGTTTGATGAAATTG GTGAAGATGTTGGATCCTAGATGTGAGCTCATTGACAAGAAGTTTCCGGTGATGGTAGTGGATGCGTTATTGAGTGGAAGGAGCGGTGGGTGTAGGAAGA GGCTGTTGGCCGCTGGAGTTTTCCAGCATCTGCAGAAGTTGGCGGAGATGGAGGTTGCTGGTGCTAAGAAAGCATTGCAGAGACTTTCCGAGAATAGGCT CAAGAGCATGTTTTCTAGGACTTGGAGGGAATAG
AA sequence Show only first row Show all	>Potri.002G224400.1 pacid=42778278 polypeptide=Potri.002G224400.1.p locus=Potri.002G224400 ID=Potri.002G224400.1.v4.1 annot-version=v4.1 MPDQMHPTTATPDPPQEQPPETLLNLITNVLSLLLLSTITVQSFIGRWQVLRPKLTSLQSSLSSLSDSPLWPQNPLLQTLLPSLLSTLQRLLSLSHQCSS TSSFLGGKLLFQSDLDIASSSLSNHLHDLGLLLRSGVLHQSNAIILSHPGPGSNKEELVFFIHDLFTRLQVGGAEFKRPALESLLQVLNEDQKLASLVAK EGNIGYLIGLLDFNNQPSIREQAVSAVSILASSDGESRKIIFEEGGLGHLLRVLETGSMPVREKAAIAIEAITDDPDNGWAISAYRGVSVLIEACQCGSQ VTQTHAVGAIRNVAGLEDIRMALAEEGVVPVIFHLLVSGTSAAQEKAADCVAILASSGEYFRTLIIQEKGLQRLMYLIQDLSSTSCTIEHILRAISSLSV SDSVSQILSSSTALIVHLGELIKHGNIISQQISASLLANLSISDGNKRAIASCMGSLVKLMESPKPVGLQEAGALALLSLLTVRWNKKELARDEKGLMKL VKMLDPRCELIDKKFPVMVVDALLSGRSGGCRKRLLAAGVFQHLQKLAEMEVAGAKKALQRLSENRLKSMFSRTWRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05810			ARM repeat superfamily protein...		Potri.002G224400 [exp]	0	1
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	3.16	0.8369	ACT6
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	4.89	0.8379	XYL1.1
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.003G194900 [exp]	6.24	0.7523
AT5G58090			O-Glycosyl hydrolases family 1...		Potri.018G150400 [exp]	7.93	0.7722
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	8.12	0.7916
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	10.58	0.7936
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Potri.018G083400 [exp]	11.09	0.8285	Pt-ARAC7.2
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	13.85	0.8062
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	14.49	0.7820
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	16.58	0.7648

Compare expression of checked genes

Potri.002G224400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.