Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05790 750 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 634 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 599 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 365 / 1e-122 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 358 / 8e-119 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 355 / 4e-118 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 352 / 9e-117 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 350 / 3e-116 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 343 / 6e-114 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 343 / 3e-113 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158400 [exp] 857 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 658 / 0 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.009G115400 [exp] 366 / 6e-123 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 367 / 1e-122 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 363 / 8e-122 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 360 / 1e-120 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 354 / 1e-117 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 352 / 4e-117 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 351 / 6e-117 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015151 [exp] 719 / 0 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040600 [exp] 622 / 0 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 622 / 0 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 591 / 0 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 578 / 0 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 354 / 3e-118 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 348 / 5e-116 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 347 / 2e-115 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 347 / 8e-115 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 344 / 2e-114 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.002G224600.3 pacid=42777225 polypeptide=Potri.002G224600.3.p locus=Potri.002G224600 ID=Potri.002G224600.3.v4.1 annot-version=v4.1 ATGGAGCCCTACTTCCTATCTTCCTTCCTCGTACTTGTTTGCATTTTCACATCTGCAGATGCGGGATCTATCGGGGTGAACTATGGGAGAATAGCAAACA ACCTGCCGGCGGCTGCGAAAGTGGTGCAGCTGGTTAAATCTCAAGGTTTAGAGCGGATAAAGGTTTACGACACCGACCCTATTGTGCTCAAAGCCTTATC TGGTTGCGGTATTAAAGTCACTGTTGATTTACCAAATGAGCTTCTCTACTCAGCTGCCAAAAACCCTTACTTTGCCCGAACTTGGGTTCAGAAAAACGTC GTCGCTTACCACCCTTCCACGCAAATCGAAGCCATTGCCGTTGGCAATGAAGTTTTCGTTGACCCACACAACACCACCAAGTTTCTCATTCCAGCCATGA GAAATATCCATCAAGCCTTGGTCAAGTTTAACCTCCATTCTTCTATTAAGATCTCTTCTCCTGTAGCTTTAAGTGCTCTCCAATCCTCTTACCCATCTTC AGCTGGGTCATTCCGACCCGAGTTAATCGAACCCGTATTCAAGCCCATGTTGGACTTCCTCCGCCAAACCGGGTCTTACCTCATGGTCAATGCCTATCCT TTCTTCGCTTACGAGTCCAACTCTGATGTCATTTCACTAGATTACGCTTTGCTTAGAGAAAACCCGGGTGTTGTGGATTCCGGGAACGGGTTAAGGTACT TTAGTCTCTTTGATGCCCAAATAGACGCCGTTTTTGCCGCGTTGTCAGCTTTGAAGTACGATGACATAAAAATAGTTGTTACCGAGACAGGGTGGCCCTC TAAAGGCGACGAGAATGAGATTGGTAGTGGCGTGGAAAATGCAGCTGCATACAACGGCAATCTCGTCCGTAGGATCCTCACTGGTGGCGGAACCCCCTTA AGACCACAGGCTGACCTGACTGTTTACCTCTTCGCCCTCTTCAACGAAAACGAAAAGGATGGGCCCACATCAGAGAGAAATTATGGGCTTTTTTACCCCG ACGAGCAAAAGGTTTATGATATCCCATTTACTGTGGAGGGGCTCAAGAGTTACAAGGATAGCAACCGGTCCTCGGACACCGGAAGTCATCAAGTTGCTGC TCCGGTCAATGGAGGCGTGTCCAAGAGTACTACAGGGAAAACGTGGTGCGTCGCAAACCCTGACGCGGGAAAACAGAAGCTACAGGCGGGTCTAGACTTT GCATGTGGCGAGGGAGGTGCTGATTGCCGTCCGATCCAGCCTGGTGCAACGTGTTATGATCCTAACACGCTCGTGGCCCACTCATCGTTCGCGTTCAACA GTTATTACCAGAAACAAGGACGTGGAATGGGTGACTGTTATTTTGGAGGAGCAGCTTATGTTGTTACTCAGGAACCAAAGTTTGGGCAGTGCGAGTTTCC CACAGGATATTGA
AA sequence Show only first row Show all	>Potri.002G224600.3 pacid=42777225 polypeptide=Potri.002G224600.3.p locus=Potri.002G224600 ID=Potri.002G224600.3.v4.1 annot-version=v4.1 MEPYFLSSFLVLVCIFTSADAGSIGVNYGRIANNLPAAAKVVQLVKSQGLERIKVYDTDPIVLKALSGCGIKVTVDLPNELLYSAAKNPYFARTWVQKNV VAYHPSTQIEAIAVGNEVFVDPHNTTKFLIPAMRNIHQALVKFNLHSSIKISSPVALSALQSSYPSSAGSFRPELIEPVFKPMLDFLRQTGSYLMVNAYP FFAYESNSDVISLDYALLRENPGVVDSGNGLRYFSLFDAQIDAVFAALSALKYDDIKIVVTETGWPSKGDENEIGSGVENAAAYNGNLVRRILTGGGTPL RPQADLTVYLFALFNENEKDGPTSERNYGLFYPDEQKVYDIPFTVEGLKSYKDSNRSSDTGSHQVAAPVNGGVSKSTTGKTWCVANPDAGKQKLQAGLDF ACGEGGADCRPIQPGATCYDPNTLVAHSSFAFNSYYQKQGRGMGDCYFGGAAYVVTQEPKFGQCEFPTGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.002G224600 [exp]	0	1
AT1G31335			unknown protein		Potri.003G148100 [exp]	1.41	0.9670
AT4G31840		AtENODL15	early nodulin-like protein 15 ...		Potri.006G184100 [exp]	4.24	0.9637
AT1G31335			unknown protein		Potri.001G082332 [exp]	5.29	0.9460
AT4G02800			unknown protein		Potri.005G209400 [exp]	5.83	0.9666
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.010G088300 [exp]	5.83	0.9440
AT1G04030			unknown protein		Potri.002G258501 [exp]	8.48	0.9585
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	9.79	0.9570
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.001G465401 [exp]	10.81	0.9468
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Potri.011G163500 [exp]	11.00	0.9477
AT5G16250			unknown protein		Potri.008G078000 [exp]	11.83	0.9577

Compare expression of checked genes

Potri.002G224600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.