Plant FIBer expression Database

Potri.002G224900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32970 772 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G158200
[exp]
1130 / 0 AT2G32970 797 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030016
[exp]
869 / 0 AT2G32970 799 / 0.0 unknown protein
Lus10035309
[exp]
806 / 0 AT2G32970 746 / 0.0 unknown protein
Lus10035322
[exp]
47 / 3e-05 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
PFAM info
Representative CDS sequence
>Potri.002G224900.14 pacid=42776948 polypeptide=Potri.002G224900.14.p locus=Potri.002G224900 ID=Potri.002G224900.14.v4.1 annot-version=v4.1
ATGGGGAAAGCCGATGATTCAGAATGCGTTTTTCCTTTAACAAGTCTCCAGATTGGAGACTTGCAGTCTTATCTCTCAGATCTTAGCCTTTTCGTTGCGT
TTGAAAGTGGGAAATTATATATTTTGGTGGACAATCGACCATGGCTGAGAAACCTTGGTTCACACCCAGCACACTTGTGGCAACTGATGGTTACCAAGTC
TAGGTTATCTCCTTTTGCAAACTCAAAGGCTCGGAGGGGGAGAAAGGAGGGAAAGGATGCTTCTTCTCAGTCCAATCCCAGTAAATCAACAAAGCTTGAG
AGATGGTTCTTGTTGATTGAAGTGGCAACTTTGTCCCGGAAGAGGGGTTTGCCTCCCGTGAAGAAATTAAGGAACTCACTGTTCTTAAGCAGTGAATTAC
ACAGGACACTTTATGGTTTTATTGTCTTTGAAGTTGCATGGAATGATGTGCGGGGTATCAACTACTTAAACGAGCTTCTGACTGACACATCTCTGGCTAT
TGAAGCTAAGATAATGCAAAGATGGGAATTTGATAGTGTAGCTCAAGCTGCAAGTAGTTTATCTTCATGGTTCTCAGGAACTCTCTCTGAGCTGCTACAA
TTGAAAGGTTATCTTGATTCTGCTACAGGAGATACCTTTTATGATGCTGAAGAAAATTTCTCAATGACACCCTCTATTGATGACGATGACAAAATTTGTG
ATGATAATCTGTGGGCTGAGGATAATTCTTCATGCTGCCTTGGTGGCAGTTCTGATGTATTTCCTGGGACCCCAGAAAATATAACGAGTGAGCCACTCAC
TCCTCCACCCACTGGGCCTTATAAGCGAAGAAGAGCGATCAGGTCAATTGGAACTAGAGTTGAAGTTGATTGTTACGCTGAGGAAACACAGGGTGGAAAT
GAATACTTGTTAGACAGCTCTGGTGCCAGTGATTGTGAGAATGTTCATGAACCTAAGCTATACAGGGATGTTTTGATTTTGTTTAGATTCAATGATCATG
ACCTGCCATTTAAACTAAAACAAGTGATAATGTCTGACCTGAGGTTACTTACTTTATTGGAAGCTGGGCTCCCGTCTTGGGTTCTCTTTCTTCAGTCATA
TCCAGGATTTTGCCATCTTTATCGTCCTTGGATGTGCCCTCTGGCAAGAGCTTTGTATGTGTTAATCTCAGTTATCACTGTTCTCATTGGATTTTTTGAC
TTGTACAAAAATGTCCCAGTTCTTAAGGCAACTGCTTCTAGTTTGTTTGGACCACTTTTAGACTGGATAGAGACTTGGGAGATGGTTTCAAGAATCAAGT
ACCTGGGAACAATGCTATTTCTACATAACTTTGAGAAAGCTGTTACTTGGTTTCTGATGGTCACACACACCACTAGATCCTTCTTTTCAGTTTTCACGCA
GCCACTGGTCGAACCGCTCACTGAGATTTTAGGCTTTCTTCTTCCATTGTGGAATATATTCATTGAAGTAATAGAGAGTTTGTATTCCATTTTTTGGGTT
GTGATTGAATCGTCTTGCAGTGTACTGGGAGGCCTACTAGAGATTTTTGTATGGCCTATCTCAGTTATCTGGAGCATTGCAACTTCAATTATATATCCCA
TATTCTGGATTGTTTGGGAAATACTTTATGCTCCGATTCGCTTGGTCCTTGCACTAGCTGGTCTTGTCGCTTTCACCTGTGCCTGGATATCGGAAATGAT
TGGGGATATTTGGAAATATGTAAATGGAATATTCCAGCTTGCTGCAGCTTCTGATGCAAGAGTCAGTACATGTGAAGTTTCAATGTGGCGTTCACTTTGG
AATGACCTTTTTTCTCAGGTTTTCCGTGCTGTAAGGAGCATATTAAATGGTTTTGTTGCCTTCTTCGCAGCCTGCAACAGGCATCGCCTAAGCATTTATA
ATCACATACAGGATTTCATTCAGAGAATACTTGGTCGGGCGCCAAGGTCACAACCATTGGATTATAGAAACAGCAGGATGACACCTGAAACTCGAAGTCG
GGCGTCTGAAGGGAGTAGGAAAATTCACATGAGATGA
AA sequence
>Potri.002G224900.14 pacid=42776948 polypeptide=Potri.002G224900.14.p locus=Potri.002G224900 ID=Potri.002G224900.14.v4.1 annot-version=v4.1
MGKADDSECVFPLTSLQIGDLQSYLSDLSLFVAFESGKLYILVDNRPWLRNLGSHPAHLWQLMVTKSRLSPFANSKARRGRKEGKDASSQSNPSKSTKLE
RWFLLIEVATLSRKRGLPPVKKLRNSLFLSSELHRTLYGFIVFEVAWNDVRGINYLNELLTDTSLAIEAKIMQRWEFDSVAQAASSLSSWFSGTLSELLQ
LKGYLDSATGDTFYDAEENFSMTPSIDDDDKICDDNLWAEDNSSCCLGGSSDVFPGTPENITSEPLTPPPTGPYKRRRAIRSIGTRVEVDCYAEETQGGN
EYLLDSSGASDCENVHEPKLYRDVLILFRFNDHDLPFKLKQVIMSDLRLLTLLEAGLPSWVLFLQSYPGFCHLYRPWMCPLARALYVLISVITVLIGFFD
LYKNVPVLKATASSLFGPLLDWIETWEMVSRIKYLGTMLFLHNFEKAVTWFLMVTHTTRSFFSVFTQPLVEPLTEILGFLLPLWNIFIEVIESLYSIFWV
VIESSCSVLGGLLEIFVWPISVIWSIATSIIYPIFWIVWEILYAPIRLVLALAGLVAFTCAWISEMIGDIWKYVNGIFQLAAASDARVSTCEVSMWRSLW
NDLFSQVFRAVRSILNGFVAFFAACNRHRLSIYNHIQDFIQRILGRAPRSQPLDYRNSRMTPETRSRASEGSRKIHMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32970 unknown protein Potri.002G224900
[exp]
0 1
AT2G32970 unknown protein Potri.014G158200
[exp]
1.41 0.7841
AT2G02970 GDA1/CD39 nucleoside phosphata... Potri.010G169100
[exp]
5.83 0.7421
AT1G31360 MED34, ATRECQ2,... ARABIDOPSIS THALIANA RECQ 2, ... Potri.003G104300
[exp]
6.24 0.7800
AT3G13530 MAPKKK7, MAP3KE... MAP3K EPSILON PROTEIN KINASE, ... Potri.005G094200
[exp]
8.06 0.7599
AT5G50530 CBS / octicosapeptide/Phox/Bem... Potri.015G098100
[exp]
8.94 0.7741
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079450
[exp]
10.19 0.7752
AT3G14160 2-oxoglutarate-dependent dioxy... Potri.003G070100
[exp]
10.39 0.7210
AT3G20720 unknown protein Potri.001G417200
[exp]
10.48 0.7619
AT4G32440 Plant Tudor-like RNA-binding p... Potri.001G173900
[exp]
10.58 0.7727
AT2G02970 GDA1/CD39 nucleoside phosphata... Potri.008G086400
[exp]
12.44 0.7152

Potri.002G224900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.