Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32980 436 / 1e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158000 [exp] 551 / 0 AT2G32980 429 / 1e-152 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035310 [exp] 463 / 2e-166 AT2G32980 446 / 1e-159 unknown protein Lus10030015 [exp] 414 / 4e-147 AT2G32980 402 / 2e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15003 [poplar] [flax] HAUS2 HAUS augmin-like complex subunit 2
Representative CDS sequence Show only first row Show all	>Potri.002G225100.1 pacid=42777688 polypeptide=Potri.002G225100.1.p locus=Potri.002G225100 ID=Potri.002G225100.1.v4.1 annot-version=v4.1 ATGTCTATGGGCTGCGACACCACCTGGGTTGGTAAAAAGCCCATCAGACGCATCGGTGGCATGGCCGATGCTCTCTCCATCGCTGCCGATCTCGGATTTT CAGTCGCACCTCCTCCTTCTCAGGAAGAACTTCAGAACTTATCCACTGCTAGTGGCGAAAAGGGTGATGACTTAATTAGAGTTTTGAGGGAACTAACTGC AGTACAAAGAAAAATAGCTGATCTACAAGTAGAACTTCAGGGTCGCAAGGATGATAAAAACGTGGCGCATTTGACACATGTTAGTGAAATGGAAAAGAAG ATTGACACATTGTCAAGGATTACTACCATACTCAAGGATGTCATTCAGAATAAGGATCGAATTATAGCTCGTCTTCAACAACCATATTCACTGGATTGCA TACCAGTAGAAGCAGAATATCAGAAACAATTTTCAGAATTGCTGATGAAGGCCGCCAGTGATTATGGTGCTTTGACAGCTTCAGCTGCAGATTTCCAATG GAGTCAGAACTTTAAGGAATCTCCTTCAGTGTGGGGGGAAATGTTACGTCCTATTCCTGTTGCTTTAGCGTCCTGTACCAGATTCTTTGAAGCCATGTCT GCCATGAGAGAATCATTTGCTACCCTTCAAGATTTGAGAGTTGGCCATTTAGGTAAAGATTCTTCACAGAGAGCCTTTGGGGATTCTGACTTTGCGACTC CTCCCTGGAGAAATGAATCAAGCTTTGATGATTTGGCAATCAAAACTGCAAGGAGACAAGAGATTGAGCGGCAAGAAGCAGATGATGGAAGTACTGAAGT GGGAGATGTTCATCAAGTCGATGACATGAGCCATAGAAGATTATCTTGGCCTCCATCAGTTAAGCACAATGGTATTTAA
AA sequence Show only first row Show all	>Potri.002G225100.1 pacid=42777688 polypeptide=Potri.002G225100.1.p locus=Potri.002G225100 ID=Potri.002G225100.1.v4.1 annot-version=v4.1 MSMGCDTTWVGKKPIRRIGGMADALSIAADLGFSVAPPPSQEELQNLSTASGEKGDDLIRVLRELTAVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKK IDTLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASAADFQWSQNFKESPSVWGEMLRPIPVALASCTRFFEAMS AMRESFATLQDLRVGHLGKDSSQRAFGDSDFATPPWRNESSFDDLAIKTARRQEIERQEADDGSTEVGDVHQVDDMSHRRLSWPPSVKHNGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32980			unknown protein		Potri.002G225100 [exp]	0	1
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.013G005100 [exp]	5.91	0.8899
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Potri.002G095600 [exp]	6.48	0.9041	ANNAT1.1
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	9.48	0.9034
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	14.14	0.9020
AT5G18800			Cox19-like CHCH family protein...		Potri.008G196600 [exp]	18.73	0.8791
AT1G61670			Lung seven transmembrane recep...		Potri.016G137700 [exp]	22.97	0.8281
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	23.06	0.8694
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	24.06	0.8076
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	24.61	0.8890	KDSA.1
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Potri.006G059300 [exp]	27.36	0.8831

Compare expression of checked genes

Potri.002G225100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.