Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 465 / 2e-163 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 388 / 9e-132 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 381 / 6e-129 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 328 / 3e-108 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT1G70710 290 / 4e-95 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 288 / 1e-94 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT2G44560 285 / 2e-93 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT4G23560 284 / 4e-93 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G02290 281 / 1e-91 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 280 / 3e-91 ATCEL2 cellulase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157600 [exp] 573 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 466 / 1e-163 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 383 / 7e-130 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 379 / 2e-128 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 358 / 5e-120 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.010G109200 [exp] 289 / 1e-94 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 287 / 6e-94 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G083200 [exp] 285 / 3e-93 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.015G128000 [exp] 284 / 1e-92 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035316 [exp] 464 / 6e-163 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 428 / 1e-148 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10030008 [exp] 394 / 6e-139 AT2G32990 399 / 5e-138 glycosyl hydrolase 9B8 (.1) Lus10033957 [exp] 387 / 9e-133 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 388 / 9e-132 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 388 / 1e-131 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 386 / 5e-131 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 356 / 3e-119 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 349 / 7e-117 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10008208 [exp] 299 / 3e-98 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.002G225200.1 pacid=42780150 polypeptide=Potri.002G225200.1.p locus=Potri.002G225200 ID=Potri.002G225200.1.v4.1 annot-version=v4.1 ATGACTATGGACAAAAGACAGCAGCATCAATATTATGGAGCAGCTCCAAAGCCTACCAGATTTGCAAAGCATTGGTGTCTTCTCCTGATCTCTATCTTCC TCTTTTTGAATACAAGGACTCTTGCTTTTGATTATGGTGATGCCTTAAGAAAGAGCCTCCTTTACTTCGAGTCACAACGTTCCGGTCGCTTACCCTACAA CCAACGAGTCACTTGGCGTCACCATTCCGGTCTCACCGATGGCTTAGAACAAGGAGTAGACTTGGTTGGAGGATATTATGATGCAGGCGACCACGTAAAA TTTGGACTGCCAATGGCGTTCACTGTGACCATGCTTTCATGGAATGTAATAGAATTTCAACATCAGATTGCCGTTGCCGGAGAATTAGAACATGCATTAG AAGCAATTAAATGGGGCACTGATTATTTCATCAAGGCACATACTAGCCCGAATGTGCTATGGGCAGAGGTGGGTGATGGTGACACCGACCACTATTGCTG GCAACGGCCAGAGGACATGACCACATCACGGCAAGCTTACAAGATCGACGAGAATAATCCCGGGTCAGATCTTGCTGGAGAAACTACGGCGGCAATGGCT GCAGCATCAATAGTGTTCAAGGGAACAAACCCGCATTACTCTCACCTACTCTTGCACCATGCCCAACAGTTGTTTGAGTTTGGAGACAAGTATAGAGGTA AATACGATGAAAGTGTGGGGGTGGTGAAAAGCTACTATGCGTCGGTGAGTGGATACAAAGACGAATTGCTGTGGGGAGCTATGTGGTTGTACAAGGCCAC CGGCGATGACAAGTATTTGGAGTACGTCATCGGAAATGCTCATTGTTTTGGTGGGATTGGCTGGGCCATGACAGAGTTCAGCTGGGATGTCAAGTATGCT GGCCTTCAAATCATGGCTTCCAAGGACTTTTAG
AA sequence Show only first row Show all	>Potri.002G225200.1 pacid=42780150 polypeptide=Potri.002G225200.1.p locus=Potri.002G225200 ID=Potri.002G225200.1.v4.1 annot-version=v4.1 MTMDKRQQHQYYGAAPKPTRFAKHWCLLLISIFLFLNTRTLAFDYGDALRKSLLYFESQRSGRLPYNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDHVK FGLPMAFTVTMLSWNVIEFQHQIAVAGELEHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRQAYKIDENNPGSDLAGETTAAMA AASIVFKGTNPHYSHLLLHHAQQLFEFGDKYRGKYDESVGVVKSYYASVSGYKDELLWGAMWLYKATGDDKYLEYVIGNAHCFGGIGWAMTEFSWDVKYA GLQIMASKDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.002G225200 [exp]	0	1
AT3G14280			unknown protein		Potri.001G163100 [exp]	3.74	0.7703
					Potri.019G032001 [exp]	10.48	0.8098
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.014G074000 [exp]	10.95	0.7442
					Potri.018G104400 [exp]	13.85	0.7540
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G066400 [exp]	16.00	0.7504
AT2G23240		AtMT4b	Arabidopsis thaliana metalloth...		Potri.009G167700 [exp]	18.70	0.6973
AT3G25570			Adenosylmethionine decarboxyla...		Potri.010G133900 [exp]	18.97	0.6407	SAMDC.2
AT3G11050		ATFER2	ferritin 2 (.1)		Potri.008G072700 [exp]	19.77	0.6925	PFE2.2
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027800 [exp]	21.21	0.7201
AT2G36026	OFP		Ovate family protein (.1)		Potri.016G072800 [exp]	27.05	0.7009

Compare expression of checked genes

Potri.002G225200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.