Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21670 735 / 0 Major facilitator superfamily protein (.1) AT1G12110 478 / 4e-163 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT2G26690 436 / 5e-147 Major facilitator superfamily protein (.1) AT3G54140 350 / 1e-113 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 334 / 2e-107 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G33440 323 / 8e-103 Major facilitator superfamily protein (.1) AT2G02040 321 / 3e-102 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 316 / 3e-100 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G59740 314 / 2e-99 Major facilitator superfamily protein (.1) AT1G68570 313 / 5e-99 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157500 [exp] 915 / 0 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 474 / 1e-161 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.005G233500 [exp] 359 / 2e-116 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 355 / 2e-115 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 348 / 8e-113 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G029200 [exp] 348 / 2e-112 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 343 / 6e-111 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.004G229000 [exp] 337 / 7e-108 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 334 / 6e-107 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030006 [exp] 701 / 0 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10035317 [exp] 688 / 0 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10032252 [exp] 482 / 1e-164 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 452 / 2e-153 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10039782 [exp] 441 / 1e-148 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 441 / 3e-148 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 434 / 2e-145 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 345 / 1e-111 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 343 / 2e-110 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 342 / 5e-110 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.002G225500.2 pacid=42777588 polypeptide=Potri.002G225500.2.p locus=Potri.002G225500 ID=Potri.002G225500.2.v4.1 annot-version=v4.1 ATGGTTTTAGCAGCAGGCCTGGGCGGGGAAGAGGGCGCACATAATGATCTTGCAGTAGACTTTCGAGGAATTCCTGTGGACAAGTCCAGAACTGGAGGAT GGCTTGCTGCGGGGCTCATTCTGGTAACCGAACTTTCGGAGAGAATATGTGTCATGGGCATATCAATGAATTTAGTGACATACCTCGTCGGAGTATTGCA TATTTCATCGGCAAAATCTGCAAACATGGTCACCAACTTCATGGGTACTCTCAACCTTCTTGGCCTCTTTGGAGGTTTCTTGGCAGATGCTAAGCTCGGT CGGTACTTGACGGTTGCGATCTTCGCAATAATAACTGCTTTGGGGGTCAGTCTACTAACAGCAGCCACAACCATTCCTAGCATGAGACCCCCACCATGCG ATGACTACAGGAAACAGAATCATCAGTGCATTGAGGTGAAAGGAAATCAACTGGTTCTGCTATATGCAGCGCTTTATACTGTAGCCCTTGGTGGTGGTGG AATTAAGTCCAATGTCTCAGGTTTTGGATCTGATCAGTTCGATCAAACAGATCCCAAGGAGGAGAAGACAATGATTTTCTTCTTCAATCGGTTTTATTTT TGCATTAGCATGGGGTCATTGTTTGCAGTTATAGTGCTGGTATATGTACAAGATAACGTCGGAAGAGGGTGGGGGTATGGAATTTCAGCAGGGACAATGG TCATCGCAGTAGCCGTGTTGATCTGTGGGACTCCACGGTACCGTTTCAAGAAGCCTCAAGGTAGCCCATTAACTATCATATGGAGGGTATCGTTATTGGC ATGGAAGAAAAGGAGACATCCTCATCCTTCACATCCCAGCCTTCTGAATGGGTATGATAGTGCCACAGTTCCCTACTCAGAGAAACTCAAGTGTCTTGAC AAGGCTGCAATCATGGATGATCCCACCTCCATCGGTGCACAAAAAAATGACCCTTGGATAGTATCAACTGTTATGGAAGTTGAGGAGGTGAAGATGGTAC TAAAGCTCATCCCAATTTGGTCTACATGTATCCTCTTTTGGACAGTTTACTCTCAAATGACTACTTTTACCATTGAGCAAGCAACCTTCATGGATCGAAA AGTTGGCTCTTTGGTTATTCCTTCAGGTTCATACTCCACCTTTCTCTTCATCACCATTCTCCTCTTTACATCCCTAAATGAAAGGCTCTTCGTTCCCCTG GCTCGAAAGCTCACCCACAATGCACAGGGACTGACAAGCCTCCAAAGGATTGGAGCTGGACTCTTTCTTTCAATACTAGCCATGGTGGCTGCTGCTAGCA TTGAGAAAGAAAGAAGGGAAACTGCTATTCAACAATCTACAAAGATAAGCGCCTTCTGGCTAGTCCCTCAATACTTCCTAGTGGGTGCCGGGGAGGCTTT CGTCTATGTTGGACAACTTGAGTTTTTCATCAGAGAGGCACCAGCAAGGATGAAATCAATGAGCACTGGGCTTTTCCTCAGCACCATCTCAATGGGTTTC TTTGTTAGCAGTTTGCTGGTGTCTTTAGTTGACAAAGCTACCAAGAAAATCTGGCTGAGGAGCAACTTGAACAAGGGGAGGTTGAATAACTTCTATTGGT TACTAGCAGTGCTAGGAGGGTTGAACTTCTTCGTTTTCCTAGCATTTGCGAGGGGACATCAGTACAAAGTTCAGCACTATATCAAGCCCAAAAACTGTAA CGAGAAAGGGTTTAAACCTGCAGGTGATTTGACTGCTTTAGAGATGGTGAAGGAGGAGGGAATGATTTAA
AA sequence Show only first row Show all	>Potri.002G225500.2 pacid=42777588 polypeptide=Potri.002G225500.2.p locus=Potri.002G225500 ID=Potri.002G225500.2.v4.1 annot-version=v4.1 MVLAAGLGGEEGAHNDLAVDFRGIPVDKSRTGGWLAAGLILVTELSERICVMGISMNLVTYLVGVLHISSAKSANMVTNFMGTLNLLGLFGGFLADAKLG RYLTVAIFAIITALGVSLLTAATTIPSMRPPPCDDYRKQNHQCIEVKGNQLVLLYAALYTVALGGGGIKSNVSGFGSDQFDQTDPKEEKTMIFFFNRFYF CISMGSLFAVIVLVYVQDNVGRGWGYGISAGTMVIAVAVLICGTPRYRFKKPQGSPLTIIWRVSLLAWKKRRHPHPSHPSLLNGYDSATVPYSEKLKCLD KAAIMDDPTSIGAQKNDPWIVSTVMEVEEVKMVLKLIPIWSTCILFWTVYSQMTTFTIEQATFMDRKVGSLVIPSGSYSTFLFITILLFTSLNERLFVPL ARKLTHNAQGLTSLQRIGAGLFLSILAMVAAASIEKERRETAIQQSTKISAFWLVPQYFLVGAGEAFVYVGQLEFFIREAPARMKSMSTGLFLSTISMGF FVSSLLVSLVDKATKKIWLRSNLNKGRLNNFYWLLAVLGGLNFFVFLAFARGHQYKVQHYIKPKNCNEKGFKPAGDLTALEMVKEEGMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21670			Major facilitator superfamily ...		Potri.002G225500 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.001G083900 [exp]	1.00	0.9688
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166100 [exp]	1.73	0.9270
					Potri.012G086200 [exp]	4.47	0.9344
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.004G046700 [exp]	5.56	0.8740
AT1G70840		MLP31	MLP-like protein 31 (.1)		Potri.017G051200 [exp]	6.48	0.9129	Pt-MSG.1
AT2G30540			Thioredoxin superfamily protei...		Potri.002G208400 [exp]	8.71	0.9220	PtrGrx9
AT1G22030			unknown protein		Potri.001G211900 [exp]	11.74	0.9146
AT1G70840		MLP31	MLP-like protein 31 (.1)		Potri.017G051100 [exp]	12.32	0.9120	Pt-MSG.2
AT3G49950	GRAS		GRAS family transcription fact...		Potri.005G145600 [exp]	13.52	0.8497
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.005G228000 [exp]	16.88	0.9212

Compare expression of checked genes

Potri.002G225500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.