Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15410 362 / 2e-122 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT4G04210 339 / 3e-115 PUX4 plant UBX domain containing protein 4 (.1) AT4G22150 332 / 3e-111 PUX3 plant UBX domain-containing protein 3 (.1) AT3G21660 148 / 6e-40 UBX domain-containing protein (.1) AT1G05040 43 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157200 [exp] 568 / 0 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1) Potri.004G004200 [exp] 358 / 2e-122 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1) Potri.011G011300 [exp] 353 / 2e-120 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.006G270300 [exp] 353 / 2e-120 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.011G005000 [exp] 308 / 7e-104 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035318 [exp] 379 / 2e-128 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10030005 [exp] 376 / 2e-127 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10031535 [exp] 369 / 4e-125 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10015145 [exp] 176 / 6e-13 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0072 [poplar] [flax] PF08059 [poplar] [flax] SEP SEP domain CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G225800.1 pacid=42778929 polypeptide=Potri.002G225800.1.p locus=Potri.002G225800 ID=Potri.002G225800.1.v4.1 annot-version=v4.1 ATGGAAGACAACACAAGAGCAGCAGCACCACCACCACCTCAGCCACCAAATTTCGATCTCAACGACACCAACAACACCGCCTTGGTCGATGCTTTTTGCG AGATCACCTCTTCTTCCAAACAAGAAGCCCTCTTTTTCTTAGAAAGTCACCAATGGGATCTAGACTCCGCTGTCTCTACCTTCCTCGACAACGACTCCGC CCCTCCCCTCGTAACTGCAATCCCTCCTCTTCCTTCTCACCCCGTTAACTCTGCCTCTCCCTCTCCCTCTCCTTCCCCTCCGCAGTCTCACTCCCCCAAT TACTCTCCCTCCCAGTCTCCGTCTCGGTCTCGCTCTCCTTCTCCCATCCCGTCTCGAGCTCCCTACAGGCTAAGATCGAGGGGTAAGAAGCCCAGCGCCA ATCGGACACGTGGCGGAGTCCGAACGCTTGCTGATCTTAATCGGACCCCTAATGCTGGGTCCGATAGTGATGACGATGACGATGACGAGCCGCAGCAGTA TTATACTGGTGGTGAAAAGAGTGGAATGCTGGTTCAAGACCCTAGCAAACGTTATGATGTGGATGGAATTTTTGATCAAGCTCGACATTCAGGTGCTGTA GAAAGACCTGCTGATTACCATCAGCCGTCTTCGAGCTCGAGAAGCTTCCCTGGAACGGGGAGGTTGCTTTCAGGGGATACAATGGTATCATCTGCTCCTC AACCACCTGCAGCTGTCAATCATGCTGTTACTCTATGGAGGAACGGGTTCACGGTGGATGATGGCCCTTTAAGGAGGTTTGATGATCCCGCTAATGCCTC CTTTTTGGAGAGCATCAAGCGGTCTGAGTGTCCAAAAGAGCTTGAACCATTGGATAGGGGGACTCAAGTGCATCTTGATCTCATGCGGCGAGAGGAAAAC TACTCTGAACCAGAGAAGCCTCTAGTTTCATTCCAAGGTGTGGGAAGAGCTTTAGGTAGCAGCAGTGACACCACTGTCCCTGCTGCCTCTGAGCCAACCG TTGCTTCTCTCAAGGCTGCTCCAGTCCCAACCCCAGGTCTAGTACTAGATTCTTCATCACCAACAACCTCAATTCAGCTCAGGTTAGCTGATGGCACGCG CATGGTTTCTCGCTTCAACTTAAACCATACTATCAGAGACATACGTGCCTTCATTGAGGCATCAAGGCCAGGTGGGGCAAGCAATTATCAACTGCAGACA ATGGGATTCCCTCCAAAACAGCTCACTGATCCGGATCAGACGATTGAGGAGGCTGGCATAGCTAGCTCTGTTGTCATCCAGAAATTCTAA
AA sequence Show only first row Show all	>Potri.002G225800.1 pacid=42778929 polypeptide=Potri.002G225800.1.p locus=Potri.002G225800 ID=Potri.002G225800.1.v4.1 annot-version=v4.1 MEDNTRAAAPPPPQPPNFDLNDTNNTALVDAFCEITSSSKQEALFFLESHQWDLDSAVSTFLDNDSAPPLVTAIPPLPSHPVNSASPSPSPSPPQSHSPN YSPSQSPSRSRSPSPIPSRAPYRLRSRGKKPSANRTRGGVRTLADLNRTPNAGSDSDDDDDDEPQQYYTGGEKSGMLVQDPSKRYDVDGIFDQARHSGAV ERPADYHQPSSSSRSFPGTGRLLSGDTMVSSAPQPPAAVNHAVTLWRNGFTVDDGPLRRFDDPANASFLESIKRSECPKELEPLDRGTQVHLDLMRREEN YSEPEKPLVSFQGVGRALGSSSDTTVPAASEPTVASLKAAPVPTPGLVLDSSSPTTSIQLRLADGTRMVSRFNLNHTIRDIRAFIEASRPGGASNYQLQT MGFPPKQLTDPDQTIEEAGIASSVVIQKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Potri.002G225800 [exp]	0	1
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.018G002000 [exp]	1.41	0.8509
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.008G046700 [exp]	5.83	0.8059
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	7.14	0.7595
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	7.93	0.8000
AT5G42150			Glutathione S-transferase fami...		Potri.012G046600 [exp]	9.79	0.7596
AT3G16310			mitotic phosphoprotein N' end ...		Potri.001G188300 [exp]	19.28	0.7708
AT3G06180			Ribosomal protein L34e superfa...		Potri.008G201700 [exp]	28.87	0.7796
AT1G07030			Mitochondrial substrate carrie...		Potri.001G282400 [exp]	31.46	0.7717
AT4G08960			phosphotyrosyl phosphatase act...		Potri.005G162900 [exp]	32.00	0.6857
AT5G02850			hydroxyproline-rich glycoprote...		Potri.016G084200 [exp]	33.46	0.7651

Compare expression of checked genes

Potri.002G225800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.