Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15415 741 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 740 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 655 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 647 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G09880 598 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 580 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 565 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G25510 546 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 530 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157000 [exp] 909 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.017G070100 [exp] 689 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 688 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 673 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 669 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 667 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 600 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 588 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 553 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035321 [exp] 746 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 743 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 736 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 706 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 687 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10036926 [exp] 629 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 625 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10023920 [exp] 603 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10022612 [exp] 594 / 0 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014417 [exp] 591 / 0 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.002G226200.1 pacid=42777756 polypeptide=Potri.002G226200.1.p locus=Potri.002G226200 ID=Potri.002G226200.1.v4.1 annot-version=v4.1 ATGATCAAACAGATATTGGGTAAGCTACCTCGAAAACCCTCAAAACCATCCAGTAACGATTCAAACAATGACGGTGGACTCCATGCCTACTCGTCCTTGA ACTCATCTAATGGGCCCAGTTCCATTAACAACTCAAAGCTCTCTTCCAATTCATCCAAATCTTTGAATCCGAGTTCGGGCGCTTCACGCTTGAACAATGG GAGCCTGGTGCCGAATAGCAAGGGGAATCAAGGGAAAAAGTCAGCTCCTCAATTGGATCCTTTGATGACTTCTGGGGTTTATGAGGCATTGCCTAGCTTT CGTGATGTTCCTAACTCGGAGAAGCATAATCTCTTTATGAAGAAGTTGAATATGTGCTGCGTTGTGTTTGATTTTAGTGATCCTTCTAAGAATCTTAAAG AGAAGGACATTAAGAGGCAGACTTTGCATGAGCTTCTTGATTATATTTCAACTGTTACTTCAAAGTTCAATGAGATTGCAATGCAAGAAATTACGAGGAT GGTGGCAGCCAATTTGTTTAGAACACTTCCATCTATGAACCATGATAAAAAGATTCTAGAAATGTTTGACCCTGAAGATGAAGAACCAGCTATGGAGCCT GCTTGGCCTCATCTTCAGATTGTGTATGATTTTCTGCTTAGATTTGTGGCTTCATCAGAGACTGATGCCAAGCTCGCCAAGAGATACATTGACCATTCAT TTGTGTTGAGATTGCTGGACTTATTTGATTCTGAAGACCAAAGAGAGAGGGAGTATTTGAAGACGATACTCCACCGTATTTATGGAAAGTTCATGGTACA TCGACCATTCATTAGAAAAGCTATCAACAATATCTTTTACATATTCATTTTCGAGACAGAGAGGCATAACGGGATTGCAGAAATGCTTGAGATATTGGGC AGCATTATTAATGGGTTTGCTTTGCCATTGAAGGAAGAGCACAAGCTTTTCCTTCTCCGTGCCTTAATTCCACTTCACAAGCCAAAATGTGTATCAATGT ATCATCAGCAACTGTCATATTGTATAACTCAATTTGTGGAGAAAGATTTCAAGCTGGCTGATACTGTAGTCCGAGGTCTGTTGAAGTATTGGCCCATGAC TAATAGTTCCAAGGAAGTTATGTTTCTTGGTGAGTTGGAGGAAGTTTTAGAGGCTACTCAGGCAGCAGAGTTTCAGCGGTGCATGGTCCCTTTGTTCCAT CAAATTGGTCGCTGCCTCAACAGCTCACATTTTCAGGTTGCAGAACGTACTTTGTTTTTGTGGAACAATGATCACATAAGAAATTTGATCACGCAGAATC GCAGAGTGATACTGCCTATAATCTTCCCAGCTTTGGAGAGAAATACAAGGGGGCATTGGAACCAAGCTGTTCAGAGTTTGACCCTGAATGTCAAGAAGAT ATTCTCAGACGCTGATCAAGAAATTTTTGATGAATGCTTGGTCAAATTTGAAGAAGATGAAGTCAAACAGATGGAGACACGGGAGAAAAGAGATTTAACT TGGAAGTGCTTGGAAGATGTGGCGACCTCTAAGGTTGTAAGCAATGAAGCTGTGCTTGTCTCGAAGTTCATCTCATCTGTTGCCATTGCCAGCGGGACAA GTCCTCGGGCCACTGCAGCTGGTTGA
AA sequence Show only first row Show all	>Potri.002G226200.1 pacid=42777756 polypeptide=Potri.002G226200.1.p locus=Potri.002G226200 ID=Potri.002G226200.1.v4.1 annot-version=v4.1 MIKQILGKLPRKPSKPSSNDSNNDGGLHAYSSLNSSNGPSSINNSKLSSNSSKSLNPSSGASRLNNGSLVPNSKGNQGKKSAPQLDPLMTSGVYEALPSF RDVPNSEKHNLFMKKLNMCCVVFDFSDPSKNLKEKDIKRQTLHELLDYISTVTSKFNEIAMQEITRMVAANLFRTLPSMNHDKKILEMFDPEDEEPAMEP AWPHLQIVYDFLLRFVASSETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYIFIFETERHNGIAEMLEILG SIINGFALPLKEEHKLFLLRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVVRGLLKYWPMTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFH QIGRCLNSSHFQVAERTLFLWNNDHIRNLITQNRRVILPIIFPALERNTRGHWNQAVQSLTLNVKKIFSDADQEIFDECLVKFEEDEVKQMETREKRDLT WKCLEDVATSKVVSNEAVLVSKFISSVAIASGTSPRATAAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Potri.002G226200 [exp]	0	1
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G119000 [exp]	5.19	0.7571
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.016G110600 [exp]	42.21	0.7206	Pt-DET2.1
AT1G50710			unknown protein		Potri.011G090800 [exp]	74.23	0.7079
AT1G76070			unknown protein		Potri.005G245600 [exp]	77.58	0.7117
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.005G085100 [exp]	80.95	0.7095
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	81.82	0.7082	PDF1.3
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	95.49	0.6777
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Potri.002G218100 [exp]	105.64	0.6899
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Potri.012G058900 [exp]	116.25	0.6654
AT5G12470			Protein of unknown function (D...		Potri.009G051800 [exp]	139.99	0.6400

Compare expression of checked genes

Potri.002G226200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.