Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NFR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21630 697 / 0 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 283 / 1e-86 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G24550 243 / 1e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G38560 235 / 2e-68 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 231 / 2e-68 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G10620 235 / 4e-68 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G68690 233 / 2e-67 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G02800 223 / 5e-67 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G52290 226 / 1e-66 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G70460 230 / 2e-66 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156400 [exp] 1014 / 0 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 806 / 0 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.001G190200 [exp] 290 / 5e-89 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 284 / 2e-87 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 283 / 6e-87 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 275 / 5e-84 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 275 / 7e-84 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G145900 [exp] 232 / 1e-70 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G053301 [exp] 236 / 1e-69 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035302 [exp] 843 / 0 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 843 / 0 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 649 / 0 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10006841 [exp] 282 / 8e-86 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 280 / 4e-85 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 278 / 5e-85 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 277 / 1e-84 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 248 / 1e-73 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022129 [exp] 237 / 7e-69 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10016021 [exp] 228 / 2e-68 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G226600.1 pacid=42779476 polypeptide=Potri.002G226600.1.p locus=Potri.002G226600 ID=Potri.002G226600.1.v4.1 annot-version=v4.1 ATGAATCCCAAATTAGGATTTGGGTTTCTTCTTCTACTGTTACTCTGCTACTCAATCGACTCGAAATGCAGCAAAGGATGCGATTTGGCTCTAGCATCCT ACTACGTTTGGCAAGGAGCTAACCTTTCATTCATCGCCGAAGTTATGCAATCAAGCATCTTAAAATCAACAGATTTCGACACCATCCTCCGCTACAATCC TCAAGTAACAAACAAAGACAGTCTCCCATCTTTCATCAGGATCAGCATCCCTTTCCCCTGTGAATGCATCAACGGTGAATTCCTCGGCCACTTCTTCACC TACAACGTCAGAAGTCAAGACACTTATGGAACGGTCGCCGATACATACTATGCCAATTTGACCACGACTCCGTCGTTGATAAACTTTAATAGCTACCCTG AGGTTAATATACCCGATAACGGAGTGCTTAATGTGAGTGTTAACTGTTCGTGTGGGGATAGCTCGGTTTCTAAGGATTACGGCTTGTTTATGACGTACCC GCTCCGACTCAATGATACTTTGGCGTCGATTGCCAATCAGACCAATCTCACGCAGTCGCTGCTGCAGCGTTATAATGTTGGTTTCGATTTTAATCAAGGG AGTGGTGTGGTTTATATTCCAACCAAAGATCCAGATGGTAGCTACCTGCCCTTGAAGTCGAGCACAGGAATAGCAGGCGGCGTTGTTGCTGGCATATGCA TAGCAGCAGTAGCCGTGGCACTGTTGTTGGCAGTTTTTATATATGTGGGATTTTACCGAAAGAAGAAGGTGAAGGGAGCAATATTGCTGCCAGCATCTCA AGAACTCTCTCCACGAATTGTTCAAGTACCTGGAAGTAACTCCAATAAACCTGTGGATGCGACTGGGTTCCAAGGTCTTACAGGTTTAACTGTGGACAAG TCTGTGGTATTCTCTTATGAAGAACTTGCTAAGGCCACTGATGACTTTAGTCTGGCAAATAAGATTGGTCAAGGAGGCTTTGGGTCTGTATACTATGCAG AACTGAGAGGCGAGAAAGCTGCCATTAAGAAGATGGACATGCAAGCATCAAAAGAATTCTTGGCTGAGCTCAAGGTTTTAACACATGTTCACCACCTAAA CCTGGTCCGATTGATAGGATATTGTGTTGAGGGTTCTCTTTTCCTTGTCTACGAATTTATTGAAAATGGAAACTTAAGCCAACATTTGCGTGGCTCTGAG AAGGATCCATTGCCATGGTCTACAAGAGTGCAAATTGCCCTTGATTCAGCTAGAGGCCTTGAATACATCCATGAGCATACTGTCCCTGTTTATATTCATC GTGATATTAAATCGGCAAACATACTGATCGACAAGAACTTCCGGGGAAAGGTTGCAGATTTTGGATTAACAAAACTAACTGAGGTTGGAAGTACATCACT CCCTACACGTCTTGTGGGTACATTTGGATACATGCCGCCAGAATATGCTCAATATGGTGATGTTTCTCCGAAAGTAGATGTTTATGCACTCGGGGTTGTC CTCTATGAACTTATTTCTGCTAAAGAAGCTATCGTCAAGTCAAATGGTTCTAGTGCTGAATCAAGGGGCCTTGTTGCTTTGTTTGAGGATGTTCTTAATC AGCCTGATCCTAGGGAAGACCTTCGCAAAGTAGTTGATCCAAGGCTCGGAGAAGACTATCCACTCGATTCAGTTCGCAAGATGGCCCAGCTTGGCAAGGC ATGCACCCAAGAGAATCCTCAGTTGCGGCCGAGTATGAGATCCATTGTGGTTGCTTTAATGACTCTTTCATCCTCGACAGAGGATTGGGATGTTGGCTCC TTCTATGAAAATCAAGCTCTTGTCAATCTAATGTCAGGAAGATAG
AA sequence Show only first row Show all	>Potri.002G226600.1 pacid=42779476 polypeptide=Potri.002G226600.1.p locus=Potri.002G226600 ID=Potri.002G226600.1.v4.1 annot-version=v4.1 MNPKLGFGFLLLLLLCYSIDSKCSKGCDLALASYYVWQGANLSFIAEVMQSSILKSTDFDTILRYNPQVTNKDSLPSFIRISIPFPCECINGEFLGHFFT YNVRSQDTYGTVADTYYANLTTTPSLINFNSYPEVNIPDNGVLNVSVNCSCGDSSVSKDYGLFMTYPLRLNDTLASIANQTNLTQSLLQRYNVGFDFNQG SGVVYIPTKDPDGSYLPLKSSTGIAGGVVAGICIAAVAVALLLAVFIYVGFYRKKKVKGAILLPASQELSPRIVQVPGSNSNKPVDATGFQGLTGLTVDK SVVFSYEELAKATDDFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEFIENGNLSQHLRGSE KDPLPWSTRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSTSLPTRLVGTFGYMPPEYAQYGDVSPKVDVYALGVV LYELISAKEAIVKSNGSSAESRGLVALFEDVLNQPDPREDLRKVVDPRLGEDYPLDSVRKMAQLGKACTQENPQLRPSMRSIVVALMTLSSSTEDWDVGS FYENQALVNLMSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	0	1	NFR1.1
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.007G093400 [exp]	5.74	0.7794
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	6.92	0.7720
AT1G69360			Plant protein of unknown funct...		Potri.004G125900 [exp]	7.87	0.6740
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.010G190100 [exp]	8.94	0.7464
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.016G050500 [exp]	19.49	0.7304
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	19.59	0.7536
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	19.67	0.7307
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	20.78	0.7464	Pt-PRX1.15
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G047200 [exp]	21.07	0.7279	ZOG1.16
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	23.91	0.7011

Compare expression of checked genes

Potri.002G226600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.