Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15417 244 / 2e-80 ATRTL1 RNAse II-like 1 (.1) AT1G01040 179 / 2e-50 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G20420 170 / 3e-50 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT3G03300 139 / 7e-37 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G43920 139 / 8e-37 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT5G45150 132 / 3e-34 RTL3 RNAse THREE-like protein 3 (.1) AT5G20320 127 / 1e-32 DCL4, ATDCL4 dicer-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G086700 [exp] 187 / 3e-57 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.002G181400 [exp] 181 / 4e-51 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.018G047500 [exp] 148 / 6e-40 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.010G181400 [exp] 130 / 6e-34 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.008G075900 [exp] 128 / 5e-33 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 124 / 9e-32 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000182 [exp] 278 / 1e-93 AT4G15417 230 / 5e-75 RNAse II-like 1 (.1) Lus10015141 [exp] 231 / 7e-76 AT4G15417 197 / 2e-63 RNAse II-like 1 (.1) Lus10005141 [exp] 178 / 2e-53 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 181 / 5e-52 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 148 / 1e-39 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019587 [exp] 130 / 3e-34 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10036447 [exp] 130 / 1e-33 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019757 [exp] 112 / 2e-27 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10005142 [exp] 46 / 2e-05 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10040013 [exp] 45 / 4e-05 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [poplar] [flax] RNase_III PF00636 [poplar] [flax] Ribonuclease_3 Ribonuclease III domain
Representative CDS sequence Show only first row Show all	>Potri.002G226700.2 pacid=42779372 polypeptide=Potri.002G226700.2.p locus=Potri.002G226700 ID=Potri.002G226700.2.v4.1 annot-version=v4.1 ATGGAGTCCCAACAAGAAGAATCAGCAGCAGCAGCAGCAGCACTTGACATGATAAAAGTGCTTGAGATAACATCAGAAAGTCACAAGGGGACGAAGGAAA GTTCTGATGATCGGTCAGAGGTTGCTTCTGGAAAACAGACGACGGATTGGGTGACGGATCTTGACGAGGTGGAGGAGATTCTCCACTACAAGTTCAAGAG CAAGAAGTTGTTAGAGGAGGCTCTTACACATGCCTCATTCTCCGATCAGTGCTTTTCTTACGAGCGGTTAGAGTACGTTGGTGATTCGGTGCTAAACCTG CTGTTCACAAAAGAACAGTACTTCTTGTACCCGGATTTGCCACCGGGGCCTTTAACCCGACTCAGATCAGCCAACGTAGATACAGAGAAGCTAGCTCGTG TTGCCATCAAACACAAATTGCATCGGTATTTACGGCACAAGATGCCTCTCCTTGAGGAACAAATTCGGGAATTCTCGCAAGCAATCTTGGACTATCCCTT GCACTCTAACGGTCTTGTTGAAACACCAAAAGCACTAGCTGACATTGTTGAAGCAGCAATAGGAGCTGTTTTCATTGACAGCAATTTCTCCATTGATGTT GTCTGGAAGATTTTCAAGGATTTGTTGGAGCCCATAATTAGTCAAGAAACACTGAAAGTTCATCCCGTGACAGAGCTGTATGAAGTGTGCCAGAAGCGGA ATCTTCAGGTAAAATTTGTGGATTTGTGGAAAGAGAGCATGGCTTTCGATGTTTTCATCGATGGCCAGTTTGTGGGCAGAGGCAGCCATGGCCTGAAGAA AGAAATTGCGCATAATAGAGCAGCGAGGAATGCACTGAACAATATTGGAAAAATATTGAGCGAGAAAGATTGCTCTCATTGA
AA sequence Show only first row Show all	>Potri.002G226700.2 pacid=42779372 polypeptide=Potri.002G226700.2.p locus=Potri.002G226700 ID=Potri.002G226700.2.v4.1 annot-version=v4.1 MESQQEESAAAAAALDMIKVLEITSESHKGTKESSDDRSEVASGKQTTDWVTDLDEVEEILHYKFKSKKLLEEALTHASFSDQCFSYERLEYVGDSVLNL LFTKEQYFLYPDLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNGLVETPKALADIVEAAIGAVFIDSNFSIDV VWKIFKDLLEPIISQETLKVHPVTELYEVCQKRNLQVKFVDLWKESMAFDVFIDGQFVGRGSHGLKKEIAHNRAARNALNNIGKILSEKDCSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Potri.002G226700 [exp]	0	1
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.001G029700 [exp]	1.73	0.8852
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013501 [exp]	3.74	0.8513
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154800 [exp]	4.24	0.8745
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G114000 [exp]	4.58	0.8681
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113000 [exp]	6.48	0.8558
AT3G62730			unknown protein		Potri.001G380000 [exp]	7.07	0.8589
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113125 [exp]	8.48	0.8489
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G113400 [exp]	9.16	0.8364
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	9.94	0.8401	Pt-FZF.1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113350 [exp]	11.83	0.8401

Compare expression of checked genes

Potri.002G226700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.