Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 175 / 1e-56 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 172 / 1e-55 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 107 / 1e-28 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 82 / 1e-19 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156000 [exp] 240 / 4e-82 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.011G087100 [exp] 215 / 2e-72 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G056600 [exp] 169 / 7e-54 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G171300 [exp] 108 / 3e-29 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 65 / 8e-13 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035299 [exp] 232 / 7e-79 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 200 / 3e-65 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10000883 [exp] 186 / 6e-61 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 185 / 4e-60 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10011373 [exp] 163 / 6e-52 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 162 / 2e-51 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 147 / 3e-46 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10030253 [exp] 112 / 5e-32 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10014550 [exp] 62 / 5e-13 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 60 / 6e-11 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF02681 [poplar] [flax] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Potri.002G226900.1 pacid=42779548 polypeptide=Potri.002G226900.1.p locus=Potri.002G226900 ID=Potri.002G226900.1.v4.1 annot-version=v4.1 ATGGAGGTTGGAGGAAGAGCTGGGCCTCAAACGACGACGGCGTCTTCTTCTTCATCATCGTCCGCAATGCTACTGTACAACCTTCCTCTCCTCTCTGCCT TGCTCTCCTTCGCTCTCGCTCAATTCCTCAAGCTCTTCACCACCTGGTTTAAAGAAAAGAGATGGGATTCTAAAAGAATGCTTGATTCTGGTGGAATGCC ATCTTCACATTCTGCAACTGTCACAGCTCTAGCAGTGGCTATAGGTTTGCAAGAAGGGACGGGATCGCCTGCTTTTGCCATTGTTGTTGTCTTGGCCTGT GTTGTGATGTATGATGCTTCAGGGGTCAGACTTCATGCTGGTCGGCAAGCTGAATTGCTGAACCAAATTGTCTGTGAGTTTCCTCCAGAACACCCGTTAT CCAGTGTTAGACCTCTGCGTGAATTACTTGGGCATACTCACCTTCAGGTTGTAGCCGGAGCTATCCTGGGATTCATTGTAGGCTACCTGATGAGAAATAC TAATTAG
AA sequence Show only first row Show all	>Potri.002G226900.1 pacid=42779548 polypeptide=Potri.002G226900.1.p locus=Potri.002G226900 ID=Potri.002G226900.1.v4.1 annot-version=v4.1 MEVGGRAGPQTTTASSSSSSSAMLLYNLPLLSALLSFALAQFLKLFTTWFKEKRWDSKRMLDSGGMPSSHSATVTALAVAIGLQEGTGSPAFAIVVVLAC VVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSSVRPLRELLGHTHLQVVAGAILGFIVGYLMRNTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.002G226900 [exp]	0	1
AT5G47180			Plant VAMP (vesicle-associated...		Potri.003G082500 [exp]	6.32	0.8670
AT1G76070			unknown protein		Potri.002G016500 [exp]	7.93	0.8764
AT1G53400			Ubiquitin domain-containing pr...		Potri.011G107700 [exp]	8.00	0.8007
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.002G052800 [exp]	10.00	0.8744
AT3G05010			Protein of unknown function, t...		Potri.005G044700 [exp]	13.56	0.8299
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.005G186400 [exp]	15.90	0.8442	MYB158,MYB.50
AT3G26380			Melibiase family protein (.1)		Potri.008G185300 [exp]	19.89	0.8139
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	20.19	0.8728
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.001G072300 [exp]	23.81	0.8497
AT4G17960			unknown protein		Potri.003G090600 [exp]	29.39	0.8382

Compare expression of checked genes

Potri.002G226900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.