Plant FIBer expression Database

Potri.002G227200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05090 149 / 2e-38 dentin sialophosphoprotein-related (.1)
AT4G20720 149 / 2e-38 dentin sialophosphoprotein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015137
[exp]
311 / 6e-100 AT4G20720 129 / 2e-31 dentin sialophosphoprotein-related (.1)
Lus10031541
[exp]
311 / 1e-99 AT4G20720 135 / 1e-33 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence
>Potri.002G227200.1 pacid=42779424 polypeptide=Potri.002G227200.1.p locus=Potri.002G227200 ID=Potri.002G227200.1.v4.1 annot-version=v4.1
ATGGCGTTCGAGATTCCGGACGATGACATAAGGGAGCTGCAGATGTCTCTGCGTAAAGAGGCGGGTCTCTCTTCTTACAACCTAGAAGAAAATGATTGGC
TTCCCGATTTGGCCTCCCTCAATGACTCCTCAATTTCCGACATTGACCCCTCTCCACCTTACCTTCGATGCAAGAACTGCAAAGGCAGGCTCCTCAGAGG
TGTAAATTCCACAATTTGTGTCTTCTGTGGGAGACAGCACAATCAGGATATCCCTCCTGACCCAATCAAGTTCATGTCTACTGTCGGTTCCCGTTGGTTT
CTCCAATCTCTTCACTTAGATGGATCGGAGATTGTGGAATCGATTATTGAAGCGAAGGAATTAAACAGAAGACAGAGCACTTCTCAAAACAACTTTCCCT
TGTCTGATCTCTTAGATTTGGAAATAAGATGGCCTTCTGAGTCCGAGAGATCAGAAACTAGCGTTACAGACAAGACTCCTGCTCAAAATTTGAGTACTTT
GAATTTGGGTGGAGTTGATCTTAACAACTTTTTTGGTGAACCTAAGGTAGACTCTGTTCCTGCTTTATCTCAAGAACAGCTCACGCTGAACAAAGATATG
GATGCTACGGGAGGAAATGCAGTTCAAGGTCATGGAAATCTTAGCTTGTTTGAGAATGTTCAGCCTTCTGAGACAATTGGAGGGTCTGACAAAGATGTAA
GTGGTGACTGGTCTTCTGGTTGGGAGGCTGAGTTTCAATCTGCTAGTTCTGGAACCCAACATCGGGAATCCAAAACATCGGATCCTTTTGTGAGTTCTTC
CTCGGTTGATCTTTCTGCCCATATGGACTCTGTTTTTGGTCCTGCTAAAGACATATTTGAAGGAAAAACAAATGAGAATGCAACTTCTTCTGCATCCAGT
GCTTTTAAGGATGATCTATGGAGTATTCCCGGCACTGGGGTAACTGGCCAGGATGAGCTATTTAAACTAGACATAAATGATGAAGGTGGTGGAAAAAGGG
GGACCACAAATAATTCTTCTATGATGAATGTTGATTGGATTGAAGACAATCAGTGGCAAACCACCACCACCAGCAAGTCAGATGAGAATAAAACCATTGA
TGAAAATGACGATTCATTTGATGCTTGGAATGATTTTAGAGGCTCAACTAGTGCACAAGTGCCTTCAAACAATTCTTTGGAACAAGATGCTAATCACATT
TTGCCATCTGTGGATCAGGAATCTGAAATAAACTTGTTTGGCGGAAGTAGTATTTCACAGGATGTTGATTTTGGTAGCTTTTCCCAGCCGGATTTCTTTT
CAGGAACATTAAACAATCAAAATGGTTCTTCAGAAGTGAATGTCATGCAGACAGAAACTTCTGTTTCAGATAGGATTAATAGTGTGAATCAAGATGATGG
GAACACTGAAGATCTTAAGAAAGGTGAAAATACGAGATCCAAGGCTGATGAAGTAGAGATGCTCATGTCGCAGATGCATGATCTCTCATTTATGCTGGAA
AGCAATCTATCAGTGCCACAAAAGATAGAACCATTTAGTTCATCTTCAAAAGATTAA
AA sequence
>Potri.002G227200.1 pacid=42779424 polypeptide=Potri.002G227200.1.p locus=Potri.002G227200 ID=Potri.002G227200.1.v4.1 annot-version=v4.1
MAFEIPDDDIRELQMSLRKEAGLSSYNLEENDWLPDLASLNDSSISDIDPSPPYLRCKNCKGRLLRGVNSTICVFCGRQHNQDIPPDPIKFMSTVGSRWF
LQSLHLDGSEIVESIIEAKELNRRQSTSQNNFPLSDLLDLEIRWPSESERSETSVTDKTPAQNLSTLNLGGVDLNNFFGEPKVDSVPALSQEQLTLNKDM
DATGGNAVQGHGNLSLFENVQPSETIGGSDKDVSGDWSSGWEAEFQSASSGTQHRESKTSDPFVSSSSVDLSAHMDSVFGPAKDIFEGKTNENATSSASS
AFKDDLWSIPGTGVTGQDELFKLDINDEGGGKRGTTNNSSMMNVDWIEDNQWQTTTTSKSDENKTIDENDDSFDAWNDFRGSTSAQVPSNNSLEQDANHI
LPSVDQESEINLFGGSSISQDVDFGSFSQPDFFSGTLNNQNGSSEVNVMQTETSVSDRINSVNQDDGNTEDLKKGENTRSKADEVEMLMSQMHDLSFMLE
SNLSVPQKIEPFSSSSKD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05090 dentin sialophosphoprotein-rel... Potri.002G227200
[exp]
0 1
AT2G18990 TXND9 thioredoxin domain-containing ... Potri.009G092700
[exp]
3.74 0.9288
AT4G17486 PPPDE putative thiol peptidase... Potri.006G154400
[exp]
8.00 0.9171
AT1G04430 S-adenosyl-L-methionine-depend... Potri.002G036732
[exp]
10.48 0.9256
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Potri.007G076900
[exp]
11.48 0.9115
AT5G08500 Transmembrane CLPTM1 family pr... Potri.018G137500
[exp]
12.96 0.8976
AT1G71270 ATVPS52, TTD8, ... T-DNA TRANSMISSION DEFECT 8, P... Potri.006G027100
[exp]
13.52 0.9184 Pt-POK.1
AT2G38910 CPK20 calcium-dependent protein kina... Potri.016G065700
[exp]
13.74 0.9141 CPK20,CPK20.2
AT5G59410 Rab5-interacting family protei... Potri.009G032100
[exp]
15.16 0.9132
AT4G24840 unknown protein Potri.012G096100
[exp]
15.90 0.9060
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Potri.009G031200
[exp]
18.30 0.9165

Potri.002G227200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.