Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCSLB05.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32540 711 / 0 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32530 693 / 0 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32620 676 / 0 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT4G15290 652 / 0 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32610 628 / 0 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1) AT4G15320 556 / 0 ATCSLB6, ATCSLB06 CELLULOSE SYNTHASE LIKE B6, cellulose synthase-like B6 (.1) AT5G17420 466 / 5e-151 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 458 / 3e-147 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 448 / 1e-143 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 447 / 2e-143 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155300 [exp] 1238 / 0 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.018G103900 [exp] 454 / 5e-146 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.004G059600 [exp] 451 / 2e-145 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.006G181900 [exp] 449 / 2e-144 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 450 / 4e-144 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.011G069600 [exp] 447 / 4e-144 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.018G029400 [exp] 449 / 9e-144 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.013G019800 [exp] 434 / 4e-138 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G052600 [exp] 427 / 7e-136 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030035 [exp] 862 / 0 AT2G32540 669 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Lus10028597 [exp] 453 / 2e-145 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 451 / 1e-144 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 451 / 2e-144 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10018902 [exp] 450 / 3e-144 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10029245 [exp] 441 / 1e-141 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 437 / 3e-140 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10006161 [exp] 427 / 2e-135 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10039607 [exp] 426 / 5e-135 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10041063 [exp] 423 / 1e-133 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.002G227300.2 pacid=42778217 polypeptide=Potri.002G227300.2.p locus=Potri.002G227300 ID=Potri.002G227300.2.v4.1 annot-version=v4.1 ATGGCCAAAGCAATCTCCTCTCCTAATTTATATGACAAAGTTGCTCTTAAATACCCTATACATAGAGCCTTTGATATTACAATCTTGGTTCTTCTCATAT CTCTCCTTGTTTATCGTCTCCTCTATATCAGCAACCATGGATTTGCTTGGCTTCTCGCTCTCCTTTGCGAGACATGTTTTACCTTCACTTGGGTTCTCAC TGTCAGTAGCAAATGGAATCCAGTGGAGTACAAAACATACCCAGAACGCCTTTCACAAAAGATACAAGAGCTGCCTCCTGTGGATATATTTGTTACAACA GCAGACCCGGTGCTAGAACCGCCGATACTCACTGTAAACACTGTCATATCCTTATTGGCAGTCGACTATCCAGCCGACAAACTAGCCTGCTATGTATCGG ATGACGGTTGCTCCCCTACCACCTACTATTCTCTTGTTGAAGCATCCAAGTTTGCCAAGCTTTGGGCTCCCTTTTGCAAGAAGCATAATATTCAAGTTAG AGCTCCTTTCAGATACTTTTCTAGTGAGGTACCTCTAAACAATTCCTCGGAATTCCAGCAAGAATACAACAAGATGAAGGATGAGTACGAGGAGCTTGCC TCCAAGATTAACGATGCAGACAAGAAATCCATCGAGAGGAATCTAAGTGGTGATTTTGCTGCCTTCTCAAATATAGAGGGCAAAAACCATCCAGCTATAA TCAAGGTTGTGTGGGAGAACAAGGCCGGCATTTCCGATGAGTTACCGCATTTGATTTACATATCAAGAGAGAAGAGGCCAAAGCATCCACATCATTACAA AGCAGGTGCAATGAATGTGCTAACTAGAGTCTCTGGAATGATGACAAATGCCCCATTCATGTTAAACCTAGACTGCGATATGTTTGTTAACAATCCAAAG ATTGTTTGCCATGCAATGTGTCTGTTGCTTGGTTCCAGAAACGAAATGGAAAGTGGGTTTGTTCAGTTCCCACAATATTTCTACGACGGACTGAAGGATG ATCCATATGGGAACCAGTTCGAGGTTTGGCACAAATATATAGGGAACGGAATAGTTGGAATTCAAGGACCTTTCTACGGGGGAACAGGATGTTTTCACAG GCGTAAAGTCATCTATGGTTCATGTCCCCGTGACGTAGGAATTCAAGCAAAAAGTCTCACTCCAGTTCATGGTGATTTAACTGAGGAGCAGCTAAAAATA TTCGGCAATTCAAAGGAGTTCGTCAGATCAGCTGCTCATGCATTACAAGGAAAGGCAAATATGAGTCCTAAAATTCTTCCAAACTTAATTGAGGCAGCAC ATGAAGTCGCTGGCTGTGGCTACGAGTATGGTACTAGCTGGGGTAAAGAGGTGGGTTGGCAATATGGATCCGCAACAGAAGACATCCTCACTGGATTAAA AATCCATGCAAGGGGTTGGAGGTCCGTTCTTTGCACGCCAGATCCTCGAGCCTTTCTGGGGTGTGCTCCACGGGTTGGACCAATCTCGATGACCCAACAA AAGAGGTGGGCAACAGGTTTGCTTGAAATATTGATGAGCGAAAGAAACCCCATTATTGCCACCCTTACTGCTAGGCTTCAATTTAGACAGTGTTTGGCAT ATCTCTGGATCCTTATTTGGGGGTTACGCTCTATTCCTGAGATTTGCTATGCAGTGTTGCCAGCTTATTGTATCATCACCAACTCCAGTTTCCTGCCCAA GGCCCACGAGCCAGCCATGTATATCCATGTGGCCCTTTTCCTGAGTTATGTCATTTACGGTCTATTAGAGTACCTTGAAACTGGATTGTCAATCCGTGCA TGGTGGAATAACCAAAGGATGGCAAGAGTGAATGCAACAAATGCGTGGTTATTTGGAGTTATAAGTGTATTCTTGAAGATTTTGAGAATTTCAGGGACGG TTTTTGAAGTTACACAGAAAGACCAATCTTCAAACAATGGTGGCGATGAAGGCAGGTTCACCTTCGATGCTTCACCAATATTTGTGCCTGGGACAACCAT TCTGCTGCTGCAATTGACGGCATTCGTCATGGGCTTTGGAGGCATGCAATTACCATCCGTTAACGATGCCTCAGGGTTGGGAGAGATATTGTGTAGCGTA TTGGTGGTAATGTGCTTCTGGCCATTTGTGAAGGGACTGTTTGGCAAGGGAAAATATGGGATTCCTCTATCCACAATTTGCAAGTCATCTCTTTTGTCAT TATCTTTTGTGTACTTGGTCACTAGTACTTCGATGGGTCAACTCTAA
AA sequence Show only first row Show all	>Potri.002G227300.2 pacid=42778217 polypeptide=Potri.002G227300.2.p locus=Potri.002G227300 ID=Potri.002G227300.2.v4.1 annot-version=v4.1 MAKAISSPNLYDKVALKYPIHRAFDITILVLLISLLVYRLLYISNHGFAWLLALLCETCFTFTWVLTVSSKWNPVEYKTYPERLSQKIQELPPVDIFVTT ADPVLEPPILTVNTVISLLAVDYPADKLACYVSDDGCSPTTYYSLVEASKFAKLWAPFCKKHNIQVRAPFRYFSSEVPLNNSSEFQQEYNKMKDEYEELA SKINDADKKSIERNLSGDFAAFSNIEGKNHPAIIKVVWENKAGISDELPHLIYISREKRPKHPHHYKAGAMNVLTRVSGMMTNAPFMLNLDCDMFVNNPK IVCHAMCLLLGSRNEMESGFVQFPQYFYDGLKDDPYGNQFEVWHKYIGNGIVGIQGPFYGGTGCFHRRKVIYGSCPRDVGIQAKSLTPVHGDLTEEQLKI FGNSKEFVRSAAHALQGKANMSPKILPNLIEAAHEVAGCGYEYGTSWGKEVGWQYGSATEDILTGLKIHARGWRSVLCTPDPRAFLGCAPRVGPISMTQQ KRWATGLLEILMSERNPIIATLTARLQFRQCLAYLWILIWGLRSIPEICYAVLPAYCIITNSSFLPKAHEPAMYIHVALFLSYVIYGLLEYLETGLSIRA WWNNQRMARVNATNAWLFGVISVFLKILRISGTVFEVTQKDQSSNNGGDEGRFTFDASPIFVPGTTILLLQLTAFVMGFGGMQLPSVNDASGLGEILCSV LVVMCFWPFVKGLFGKGKYGIPLSTICKSSLLSLSFVYLVTSTSMGQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.002G227300 [exp]	0	1	ATCSLB05.1
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	1.00	0.9800	Pt-CHRC.3
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	4.00	0.9790
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	4.89	0.9774
AT1G50020			unknown protein		Potri.009G084800 [exp]	5.47	0.9617
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	7.34	0.9656
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.002G153800 [exp]	8.83	0.9694
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	9.48	0.9647
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	9.79	0.9714
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	10.39	0.9628
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	10.77	0.9518

Compare expression of checked genes

Potri.002G227300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.