Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18290 164 / 3e-50 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) AT3G04090 162 / 1e-49 SIP1A, SIP1;1 small and basic intrinsic protein 1A (.1) AT3G56950 89 / 2e-21 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2) AT2G37170 54 / 1e-08 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G37180 54 / 1e-08 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT4G00430 54 / 2e-08 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT1G01620 53 / 3e-08 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT3G61430 53 / 3e-08 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G23400 53 / 4e-08 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT2G39010 53 / 5e-08 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G154400 [exp] 392 / 6e-140 AT5G18290 183 / 2e-57 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.019G030900 [exp] 222 / 6e-73 AT3G04090 236 / 3e-78 small and basic intrinsic protein 1A (.1) Potri.013G053400 [exp] 212 / 6e-69 AT3G04090 224 / 6e-74 small and basic intrinsic protein 1A (.1) Potri.006G027200 [exp] 100 / 8e-26 AT3G56950 264 / 1e-89 small and basic intrinsic protein 2;1 (.1.2) Potri.016G024900 [exp] 100 / 2e-25 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.009G013900 [exp] 59 / 3e-10 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.004G176300 [exp] 55 / 8e-09 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G089500 [exp] 54 / 1e-08 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.006G128200 [exp] 53 / 4e-08 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035281 [exp] 265 / 1e-89 AT3G04090 176 / 9e-55 small and basic intrinsic protein 1A (.1) Lus10030046 [exp] 260 / 8e-88 AT3G04090 172 / 2e-53 small and basic intrinsic protein 1A (.1) Lus10042528 [exp] 164 / 3e-46 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10021989 [exp] 160 / 9e-45 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038989 [exp] 90 / 2e-21 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10027275 [exp] 87 / 3e-20 AT3G56950 249 / 2e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10035395 [exp] 86 / 4e-19 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10030997 [exp] 83 / 7e-18 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10026504 [exp] 53 / 3e-08 AT5G60660 358 / 1e-126 plasma membrane intrinsic protein 2;4 (.1) Lus10022577 [exp] 52 / 5e-08 AT4G00430 248 / 3e-83 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.002G227500.1 pacid=42777149 polypeptide=Potri.002G227500.1.p locus=Potri.002G227500 ID=Potri.002G227500.1.v4.1 annot-version=v4.1 ATGGGAGCAATCAAGGGAGCCATAGTAGATGGGATTTTGACAGCCATGTGGGTATTCAGCGTTCCTTTGCTGGGTGTTTTCTCCTCCATCATAGCAACAT ATGTGGGTGTTGAGGCCATGTCAATAGCAGGTCTTTTCATATCCATTAATGTCGCCGCTCTTTTTATGCTAACTTTCAGCTTGATAGGAGCTGCCTTCGG TGGTGCCAGTTTCAACCCTGCCACGACGATAACACTCTACATAGCTGGCCTAAAGCCTGATGCATCTCTCTTGTCCATGGCTTTGCGTTTTCCTGTTCAG GCAGCTGGTGGGGTTGGTGGTGCCATGGCAATTAGGGGAGTGATGCCTAAACATTACAGGCATGTGCTCAAAGGAGGTCCTTCTTTGAGGGTGGACTTGC ATACAGGGGCGATTGCTGAGGGGGTGTTGACTTTTCTGATCTGTCTTACTTTACATTTTCTTTTGCTCAAGGGCCCTAAAAATGTTGTGTTGAAGGTGTG GTTGCTAGCGGTGGCTACTGTGGGATTGGTCATGGCTGGAGGTAAGTATACCGGCCCTTCAATGAATCCTGCCAACGCTTATGGATGGGCTTATTTGGGC AATAGGCATACCACCTGGGATTTCTTCTATGTCTATTGGATTTGCCCCTTTATAGGGGCAATTTTAGCTGCTTTTGTTTCTAAATTTCTTTTCAAGGCAG CACCGATCAAGGAGAAAAAAGCCTGA
AA sequence Show only first row Show all	>Potri.002G227500.1 pacid=42777149 polypeptide=Potri.002G227500.1.p locus=Potri.002G227500 ID=Potri.002G227500.1.v4.1 annot-version=v4.1 MGAIKGAIVDGILTAMWVFSVPLLGVFSSIIATYVGVEAMSIAGLFISINVAALFMLTFSLIGAAFGGASFNPATTITLYIAGLKPDASLLSMALRFPVQ AAGGVGGAMAIRGVMPKHYRHVLKGGPSLRVDLHTGAIAEGVLTFLICLTLHFLLLKGPKNVVLKVWLLAVATVGLVMAGGKYTGPSMNPANAYGWAYLG NRHTTWDFFYVYWICPFIGAILAAFVSKFLFKAAPIKEKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.015G141800 [exp]	1.41	0.8442
AT1G29720			Leucine-rich repeat transmembr...		Potri.011G072941 [exp]	2.44	0.8543
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048800 [exp]	2.44	0.8396
AT2G40070			unknown protein		Potri.016G114900 [exp]	8.66	0.7710
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466300 [exp]	9.79	0.7705
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080200 [exp]	14.96	0.7832
AT5G53880			unknown protein		Potri.011G117001 [exp]	17.66	0.7744
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232301 [exp]	18.33	0.7731
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	21.67	0.7787	Pt-MYB.42,MYB181
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.015G022000 [exp]	22.02	0.8009	MYB179

Compare expression of checked genes

Potri.002G227500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.