Plant FIBer expression Database

Potri.002G227701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G038350
[exp]
51 / 4e-07 ND /
Potri.005G038250
[exp]
50 / 9e-07 ND /
Potri.005G038301
[exp]
45 / 5e-05 ND /
Potri.005G038600
[exp]
42 / 0.0003 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G227701.1 pacid=42779247 polypeptide=Potri.002G227701.1.p locus=Potri.002G227701 ID=Potri.002G227701.1.v4.1 annot-version=v4.1
ATGGGTGTGATCTCATCAAAATGGGTTTCTTTTCTTCTGCTTTTCTTGTGCATTGTCCTTCATTTGAGTGCAATCAGCCTTAGTGATGACAAGCTTGACA
AAACTAGATATCAAGACGATGATTGTAGGTGGAATCCAAGACGTTGTGGAGGCCGCTTTGGTCGTGGACGTGGGGGAGGACTAGGAGGTGGTGGTGGTAG
AGGTGGTGGAGCTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTAGAGGTGGTGGATTTGGCGGTGGAGCCGGAGGAGGAGGAGGGCTTGGTGGTGGTGGT
GGTAGAGGTGGTGGAGCTGGAGGAGGAGGAGGACTTGGTGGTGGTGGTGGTAAAGGTGGTGGCTTTGGTGGTGGAGCTGGAGGAGGAGGAGGGCTTGGTG
GCGGTGCTGGAGGGGGTGTTGGAGGAGGTGGTGGCTTTGGTGGTGGTGGTGGAGGAGGTGTTGGAGGTGGAGGTGGTCATGGTGGAGGATTTGGGGCTGG
AGGAGGTGTAGGTGGTGGAGCTGGAGGTGGTGCTGGTGGAGGTGGTGGTTTTGGTGGAGGTAGTGGAGGTGGTGTTGGTGGTGGGTCAGGACATGGTGGA
GGCTTTGGAGCTGGAGGAGGGGTAGGAGGTGGAGCTGGAGGTGCTGGTGGTGGTGGAGGAGGTGGAGGAGGAGGTGGTGGCGGTGGTATTGGTGGTGGTT
CAGGTCATGGTGGGGGCTTTGGAGCTGGAGGTGGTGTAGGTGGTGGCCTTGGAGGTGGTGCTGGAGGAGGTGGTGGTGGAGGTGGTGGAGGAGGTGGAGG
TCTAGGTGGTGGATCAGGCCATGGTGGTGGCTTTGGAGCGGGTGGAGGTCTAGGAGGTGGAGGTGGTGGAGGTTTAGGTGGTGGTGCCGGTGGAGGTGGA
GGTGCAGGAGGTGGGCATGGTGGTGGAGCTGGTGGAGGATTTGGAGTTGGGATTGGCATTGGTGTAGGAGTTGGGGCTGGCGCCGGCCACGGGTCTGGAA
GTGGTTCGGGTGGTGGTGGTGGCGGACGCTAA
AA sequence
>Potri.002G227701.1 pacid=42779247 polypeptide=Potri.002G227701.1.p locus=Potri.002G227701 ID=Potri.002G227701.1.v4.1 annot-version=v4.1
MGVISSKWVSFLLLFLCIVLHLSAISLSDDKLDKTRYQDDDCRWNPRRCGGRFGRGRGGGLGGGGGRGGGAGGGGLGGGGGRGGGFGGGAGGGGGLGGGG
GRGGGAGGGGGLGGGGGKGGGFGGGAGGGGGLGGGAGGGVGGGGGFGGGGGGGVGGGGGHGGGFGAGGGVGGGAGGGAGGGGGFGGGSGGGVGGGSGHGG
GFGAGGGVGGGAGGAGGGGGGGGGGGGGGIGGGSGHGGGFGAGGGVGGGLGGGAGGGGGGGGGGGGGLGGGSGHGGGFGAGGGLGGGGGGGLGGGAGGGG
GAGGGHGGGAGGGFGVGIGIGVGVGAGAGHGSGSGSGGGGGGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G227701
[exp]
0 1
AT5G19600 SULTR3;5 sulfate transporter 3;5 (.1) Potri.006G156038
[exp]
4.00 0.9845
AT5G19600 SULTR3;5 sulfate transporter 3;5 (.1) Potri.006G158900
[exp]
4.47 0.9842
AT2G36380 ABCG34, PDR6, A... ATP-binding cassette G34, plei... Potri.009G147100
[exp]
4.89 0.9804
Potri.001G227750
[exp]
7.54 0.9763
AT1G22150 SULTR1;3 sulfate transporter 1;3 (.1) Potri.005G167300
[exp]
9.48 0.9723
AT1G78850 D-mannose binding lectin prote... Potri.011G110000
[exp]
10.39 0.9766
AT1G78940 Protein kinase protein with ad... Potri.014G001700
[exp]
10.39 0.9736
AT3G16660 Pollen Ole e 1 allergen and ex... Potri.010G012400
[exp]
10.81 0.9800
AT1G73850 Protein of unknown function (D... Potri.015G046900
[exp]
16.91 0.9751
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Potri.006G248000
[exp]
16.91 0.9794

Potri.002G227701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.