Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62280 120 / 7e-31 SLAH1 SLAC1 homologue 1 (.1) AT1G62262 113 / 1e-28 SLAH4 SLAC1 homologue 4 (.1) AT5G24030 56 / 2e-08 SLAH3 SLAC1 homologue 3 (.1) AT4G27970 54 / 8e-08 SLAH2 SLAC1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114300 [exp] 55 / 3e-08 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.008G084901 [exp] 50 / 2e-07 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1) Potri.015G026700 [exp] 47 / 8e-06 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.010G170050 [exp] 40 / 0.0008 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015133 [exp] 114 / 3e-28 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10024306 [exp] 91 / 3e-20 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10027553 [exp] 67 / 5e-12 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10039312 [exp] 67 / 8e-12 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10031545 [exp] 47 / 4e-06 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1) Lus10006678 [exp] 44 / 0.0001 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10007023 [exp] 42 / 0.0005 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [poplar] [flax] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Potri.002G227800.2 pacid=42778562 polypeptide=Potri.002G227800.2.p locus=Potri.002G227800 ID=Potri.002G227800.2.v4.1 annot-version=v4.1 ATGGATGCGAGAAATTCCGAACCCGTTATCGAAATTGTGATCGAGCAAACAGCAATACCATCTCCACATCGTGGCTCTCTATCTATCATCAAGCAATCTT TGATATCAATCTTGGCTAGGTTACATGCCGGTTACTTTAGGATTAGCCTTGCTCTATGTAGTCAAGCCTTACTATGGAAAATCCTTGGAGAATCTCCTGA TCATGCACATGCTCTTAGACGTATGTTTCGAATGCTGCCCTCCACAGCTTTTGTTCTTCACTGGTCACTAGCTCTCTTCTCATTAGCCTCACTCTCTCTT CTGTATATCCTTAGATGTTTATATCACTTTGAAATGGTGAAGGCTGAGTTCTTGCACCATGTAGGAGTGAACTATCTTTTTGCTCCTTGGATTTCCTGGC TTCTTTTGCTTCAATCATCAACATTCATTACTCCAAAACCATGTATACCTAGTTCTGTGGTGGGTTTTTGTGGTTCCAGTGGTGGTTCTCGATGTCAAAA TCTACGGCCAGTGGTTTACCAAAGGAAAGAGGTTTTTATCAGCGGTGGCGAATCCTACCAGTCAGCTATCAGTGATAGGGAATTTGGTAGGGGCCCGGGC TGCAGCGGAAATAGGGTGGAGGGAGAGTGCTGTTTGTATGTTCTCTTTGGGCATGGCACATTATCTTGTCCTGTTTGTTACACTATATCAAAGGTTATCA GGGGGCAACAGCCCGTCTTCTTCTTGTTCTTTGCAGCTCCAAGTGTGGCAAGCTTGGCTTGGGACTCCATTTCCGGAAGTTTTGATAACCCGCAAAGATG CTCTTCTTTCTGTCTCTCTTCCTCTTCTTATCCCTGTGCTGGCTCTGGCTTCAGTAGATTATGCGCAAGAGGTGAAGGGCTTCCTTGCACATGGAGTAAT GCTTGTGCTATTGTCGTTGTGCGTTCTGGTATCTCTTTCTCTAATGGAGCTCACTGCGCTCAATACGAAGATGCTGTTCCTAGAAAATGA
AA sequence Show only first row Show all	>Potri.002G227800.2 pacid=42778562 polypeptide=Potri.002G227800.2.p locus=Potri.002G227800 ID=Potri.002G227800.2.v4.1 annot-version=v4.1 MDARNSEPVIEIVIEQTAIPSPHRGSLSIIKQSLISILARLHAGYFRISLALCSQALLWKILGESPDHAHALRRMFRMLPSTAFVLHWSLALFSLASLSL LYILRCLYHFEMVKAEFLHHVGVNYLFAPWISWLLLLQSSTFITPKPCIPSSVVGFCGSSGGSRCQNLRPVVYQRKEVFISGGESYQSAISDREFGRGPG CSGNRVEGECCLYVLFGHGTLSCPVCYTISKVIRGQQPVFFLFFAAPSVASLAWDSISGSFDNPQRCSSFCLSSSSYPCAGSGFSRLCARGEGLPCTWSN ACAIVVVRSGISFSNGAHCAQYEDAVPRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.002G227800 [exp]	0	1
					Potri.003G151850 [exp]	1.00	0.9921
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.007G068200 [exp]	1.41	0.9912
					Potri.009G050500 [exp]	4.89	0.9767
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	6.63	0.9871
AT4G31980			unknown protein		Potri.003G209832 [exp]	8.94	0.9816
					Potri.018G136000 [exp]	9.16	0.9650
AT5G35390			Leucine-rich repeat protein ki...		Potri.006G078600 [exp]	10.24	0.9722
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011601 [exp]	13.07	0.9810
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	14.45	0.9736
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.006G236200 [exp]	19.62	0.9674

Compare expression of checked genes

Potri.002G227800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.