Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63245 44 / 3e-07 CLE14 CLAVATA3/ESR-RELATED 14 (.1) AT1G68795 36 / 0.0007 CLE12 CLAVATA3/ESR-RELATED 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107400 [exp] 74 / 7e-19 ND / Potri.003G124000 [exp] 64 / 6e-15 ND / Potri.015G139966 [exp] 42 / 1e-06 ND / Potri.012G138200 [exp] 41 / 6e-06 ND / Potri.015G139900 [exp] 40 / 1e-05 AT1G63245 44 / 3e-07 CLAVATA3/ESR-RELATED 14 (.1) Potri.010G160600 [exp] 36 / 0.0009 AT1G69320 48 / 1e-07 CLAVATA3/ESR-RELATED 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008016 [exp] 37 / 0.0004 ND 40 / 2e-05
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G228000.1 pacid=42778202 polypeptide=Potri.002G228000.1.p locus=Potri.002G228000 ID=Potri.002G228000.1.v4.1 annot-version=v4.1 ATGGGTACTACTACTCTATACCCCAGGCTCTCATTTTTCGTGCTAATGATCATGCTAGTAGTCAATCAGCTCTCAAGTTGCCACTTCATTCACAGCAGAA CAAGTGAAGAACCAGGGAAAACAGTCGAAACTGATCTTTCTTCCCACTTCTCATGGAAATTCAAAGAAATGGTTCGAGAGAGATCTAGCAAAGATGAGTC AGACACAATTTATCGAGTTTCTCGTCGAAAAATCCCAGCAGGGCCAAATCCACTTCATAACTGA
AA sequence Show only first row Show all	>Potri.002G228000.1 pacid=42778202 polypeptide=Potri.002G228000.1.p locus=Potri.002G228000 ID=Potri.002G228000.1.v4.1 annot-version=v4.1 MGTTTLYPRLSFFVLMIMLVVNQLSSCHFIHSRTSEEPGKTVETDLSSHFSWKFKEMVRERSSKDESDTIYRVSRRKIPAGPNPLHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.002G228000 [exp]	0	1
					Potri.019G031732 [exp]	8.12	0.7947
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	11.22	0.7763
AT5G28740			Tetratricopeptide repeat (TPR)...		Potri.011G043812 [exp]	11.48	0.7635
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	13.56	0.7834
					Potri.017G044300 [exp]	15.29	0.7631
AT5G50170			C2 calcium/lipid-binding and G...		Potri.015G083500 [exp]	16.61	0.7190
					Potri.017G152701 [exp]	17.46	0.7833
AT1G15190			Fasciclin-like arabinogalactan...		Potri.001G306800 [exp]	24.81	0.7674
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129300 [exp]	30.82	0.7687
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	30.85	0.7298

Compare expression of checked genes

Potri.002G228000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.