Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 604 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 590 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 564 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 179 / 1e-51 Eukaryotic aspartyl protease family protein (.1) AT1G69100 154 / 4e-42 Eukaryotic aspartyl protease family protein (.1) AT5G43100 49 / 9e-06 Eukaryotic aspartyl protease family protein (.1) AT3G54400 45 / 8e-05 Eukaryotic aspartyl protease family protein (.1) AT3G52500 45 / 0.0001 Eukaryotic aspartyl protease family protein (.1) AT3G50050 43 / 0.0006 Eukaryotic aspartyl protease family protein (.1) AT3G42550 43 / 0.0006 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 632 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 608 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 605 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 538 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 476 / 1e-165 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 436 / 7e-149 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 46 / 6e-05 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 44 / 0.0002 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 43 / 0.0004 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 615 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 606 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 578 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 574 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 573 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 508 / 5e-177 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 492 / 1e-171 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 454 / 2e-156 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10004204 [exp] 48 / 2e-05 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 45 / 8e-05 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease CL0129 [poplar] [flax] PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 CL0129 [poplar] [flax] PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.002G228300.4 pacid=42776954 polypeptide=Potri.002G228300.4.p locus=Potri.002G228300 ID=Potri.002G228300.4.v4.1 annot-version=v4.1 ATGGGTACTCAGTTCACTGCTATTTGGATGGCTCTTCTCCTTTCGTTCCCGGTGGTTTTGTCCGCACGCGATGATGGGCTGATGAGAATTGGACTAAAGA AGAAGAAATTGGATCACCTCGGTCGTCGGGTTGTACCTGGATCAGTCAACTTCATTCCCAAGGAAGAGGGAGGAGGAGCTTCCAAACCTGCAGCTACCAA AAAGTATTACAATATCGGGGAAACCGAAGCCGATATTGTTGCACTAAAAAACTACTTGGATGCTCAGTATTATGGTGAAATTGCTATTGGCACACCTCCT CAAACTTTCACCGTTATATTTGATACAGGAAGCTCTAATCTTTGGGTGCCCTCGTCAAAATGTTATTTCTCGCTTGCTTGCTATTTCCATTCCAAGTATA AGTCCAGTGCGTCAACAACCTACGTCAAGAATGGCACCTCTGCTGCAATTCAATATGGAACTGGTTCAATTTCTGGTTTCTTTAGCCAGGACAGTGTTGA AGTTGGTGATCTTGTTGTTAAGAATCAGGGTTTTATCGAGGCAACAAAAGAACCAGGTGTCACGTTCTTGGCTTCCAAGTTTGATGGTATACTTGGACTT GGGTTTCAAGAAATCTCAGTTGGAAATGCTGTTCCAGTTTGGTACAATATGGTTAATCAAGGTCTTGTTAAGGAAAAAGTTTTTTCATTTTGGTTGAACC GCAATGTTGAAGGGGAAGAAGGGGGAGAAATTGTGTTTGGTGGGGTGGATCCTAATCATTACAAGGGCGAGCACACATATGTTCCTGTGACTCATAAGGG GTATTGGCAGTTTGATATGGGAGACTTGTTGATTGGCACTGAAACAACTGGTTTGTGTGCTGGTGGGTGTAAAGCAATTGCTGATTCTGGAACCTCTTTG CTGGCGGGTCCAACAACTGTGATCACTCAAATTAATAATGCGATTGGAGCCTCTGGCATTGTAAGTGAAGAATGCAAGACGGTGGTTGCACAATATGGGA AAATTATACTGGAAATGCTGGTGGCTCAGGCTCAACCACGAAAGGTGTGCTCTCAAATTAGCTTCTGTACTTTTGATGGGACTCAGGGTGTCAGTATGAA CATTGAGAGTGTGGTAGAAGAAAACTCAGACAAATCATCAGATGGTCTGCATGATGCCATGTGTACTGCTTGTGAGATGATGGTTGTATGGATGGAGAAT CGGCTCAGGCTTAATGACACTGAAGATCAGATTCTTGATTACGTGAATAATCTCTGTGACCGATTGCCCAGTCCAAATGGAGAATCAGCAGTTGAATGTA GCAGTCTATCCTCCATGCCCAGTATCTCATTTGAAATTGGTGGTAAATTATTTGAACTGTCACCTGAGCAGGTATGGCAATTTTGTTCAGTATATTTATT ATGCTCCAGCTATTGTATTCAAAATTTTTCATATTTCATTTCATTTAACTTAATTAAGCTCGAAGGTAGTCGGTTAATTGCCAGGGTTGACCTGTCTATT AATTCAATTTTGTTGCACTCCTCTCCATTGAAATGTCGGTCAATCTACCTCGTGGAAATATTCTTTCATGTCCTTTTTCATATACAAATATGA
AA sequence Show only first row Show all	>Potri.002G228300.4 pacid=42776954 polypeptide=Potri.002G228300.4.p locus=Potri.002G228300 ID=Potri.002G228300.4.v4.1 annot-version=v4.1 MGTQFTAIWMALLLSFPVVLSARDDGLMRIGLKKKKLDHLGRRVVPGSVNFIPKEEGGGASKPAATKKYYNIGETEADIVALKNYLDAQYYGEIAIGTPP QTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKSSASTTYVKNGTSAAIQYGTGSISGFFSQDSVEVGDLVVKNQGFIEATKEPGVTFLASKFDGILGL GFQEISVGNAVPVWYNMVNQGLVKEKVFSFWLNRNVEGEEGGEIVFGGVDPNHYKGEHTYVPVTHKGYWQFDMGDLLIGTETTGLCAGGCKAIADSGTSL LAGPTTVITQINNAIGASGIVSEECKTVVAQYGKIILEMLVAQAQPRKVCSQISFCTFDGTQGVSMNIESVVEENSDKSSDGLHDAMCTACEMMVVWMEN RLRLNDTEDQILDYVNNLCDRLPSPNGESAVECSSLSSMPSISFEIGGKLFELSPEQVWQFCSVYLLCSSYCIQNFSYFISFNLIKLEGSRLIARVDLSI NSILLHSSPLKCRSIYLVEIFFHVLFHIQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.002G228300 [exp]	0	1
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	5.47	0.7319	Pt-GLX2.1
AT3G03620			MATE efflux family protein (.1...		Potri.013G069400 [exp]	10.72	0.7374
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	19.69	0.7232
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.015G031800 [exp]	29.39	0.6517	Pt-NANN.2
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	31.14	0.7062
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	31.30	0.6535
AT5G53880			unknown protein		Potri.011G117001 [exp]	34.72	0.7045
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	40.31	0.6172	Pt-DDB1.1
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	42.04	0.6938
					Potri.014G103100 [exp]	44.49	0.6747

Compare expression of checked genes

Potri.002G228300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.