Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62300 337 / 3e-108 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G04450 315 / 5e-100 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G22070 315 / 6e-100 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G01720 202 / 6e-58 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G68150 156 / 3e-42 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 150 / 4e-39 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 146 / 2e-37 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G69810 130 / 9e-33 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT1G80840 99 / 8e-23 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT2G25000 99 / 8e-23 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155100 [exp] 707 / 0 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.004G007500 [exp] 376 / 6e-123 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.011G007800 [exp] 317 / 3e-100 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G111900 [exp] 240 / 4e-72 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 230 / 4e-68 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.001G208600 [exp] 164 / 1e-43 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.015G064100 [exp] 163 / 7e-43 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.017G079500 [exp] 159 / 5e-42 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G044500 [exp] 110 / 3e-26 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035286 [exp] 315 / 1e-99 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10030040 [exp] 249 / 5e-74 AT1G62300 224 / 2e-96 WRKY family transcription factor (.1) Lus10022959 [exp] 228 / 6e-67 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10021554 [exp] 228 / 1e-66 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10015546 [exp] 212 / 5e-63 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10038028 [exp] 210 / 2e-61 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10023615 [exp] 149 / 4e-38 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035971 [exp] 145 / 1e-37 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10024246 [exp] 149 / 2e-37 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10009969 [exp] 136 / 1e-36 AT4G04450 166 / 8e-49 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G228400.1 pacid=42778677 polypeptide=Potri.002G228400.1.p locus=Potri.002G228400 ID=Potri.002G228400.1.v4.1 annot-version=v4.1 ATGGCCAAAGGAAGTGGTGGACTCTCCATTGATTCAGATCCAATCGCTACCAGTGGCTACTTTCTACACAAATCAACTGTGCTCACTTCTTTCCCTGAAG AGAACATCAATCCCAAGTGGAAACATCTTGCTGCAACTAGCGCGAGACAATCCATGGATGTCAAAGCGAATAGATCTCCTCCTTCTACTTTCCAATTCCC TGTCAAACTTATAAACACCAATGAACATGACCACGATCATGATCCTGATTCTTCTTTGCCATCTGATAATAGACGACGGACAGTCATCGATGAGATGGAC TTTTTTGCTGACAAGAAACATGATGTTGATCGCATGACCATCATAAACAATGGTACTGGTGATTTAAAAGACTCTGGAAGTCCCGCTGGATTGGAGCTAA ACGTCAACACTGGTTTGAATCTTCTTACTACCAATACTAGCAGCGAACAATCGACTGTGGATGATGGCGTATCGTCGAACATGGAAGATAAAAGAGCCAA GAGTGAGCTAGCAGTTCTGCGAGCTGAGGTAGAACGAATGAAAGTGGAGAATCTACGGTTGAAAGGCATGTTAAATCATGTTACTAGTAATTACAATGCA TTGCAGATGGATTTAGTTACACTTATGCAGGACCAAAATTCTCATCACAAGAATGAACAGCGTGATGGCAAAAACAAAGATGATGGGGTAGTTCCAAGGC AGTGTATGGATCTTGGTCTAGTTGCTGCTGCGGGTGGCGATGACACGGATGACCATTCTCTATCTACATCAGAAGGAGGAAGGAGGCGTGATCGATCAAG ATCATCTGGAAATAATGCAGAGAATAACAATGAAGATGGGACAGTCTTTGAACAAGATAAGAAAGGAACCGATCAACGAGAGGAGAGCCCAGATCAAGGT TGGGGCTCTAATAAGGCTGCTAGATTTAACTCGACGAAAACTGTTGATCAAACGGAGGCTACAATAAGGAAGGCTCGTGTGTCTGTTCGAGCTAGATCAG AGGATGCTACGATATCGGATGGATGCCAATGGCGAAAGTATGGACAGAAGATGGCAAAAGGAAATCCATGTCCTCGAGCTTATTATCGGTGCACCATGGC TGCTGGTTGCCCAGTTCGAAAACAGGTACAGAGATGCGCAGAAGATCGGACCATCCTCACAACTACATACGAGGGTAACCACAGCCACCCTTTGCCTCCG GCTGCCACGGCAATGGCATCAACCACATCATCGGCGGCAAGAATGCTGTTGTCAGGCTCCATGTCTAGTACTGATGGACTGATGAACTCAAATTTCCTTA CCAGAACGATCCTCCCATGCTCCTCTAGTCTTGCCACTATATCTGCTTCAGCTCCATTTCCTACTGTTACATTGGACCTAACCCAAAATCCCAGCCCTCT ACAGCTCCCAAAGCAACCAATTCAATTTCAATTCCCATTTCCAAACCCACCTCAAAATCTTGCCACCGCTTCAGCTGCAGCATTGCTGCCTCAGATTCTT GGACAAGCACTCTACAATCAATCAAAGTCCTTTGGCCTGCAAATGTCTCAAGAAATGCAGCCTAATCGATTGGACCACCAATCACAACCTGCATTGCAGC AGGGGCAGAAAAATTCATTGGCTGACAGCTTGACCACAGCAACTGCTGCCATTGCAGCTGATCCTAACTTCACTGCAGCTCTAGCAGCAGCAATTACCTC GATAATTGGTGGGGCTCACCAAAACAACATTAATAGTATTAATAACGTTCAGACAACGACCAGCAACAACAATAGCAATGGCAACATAACTACCAGCAAC AACAATAGCTATGGTCACAATAAAATTACCAATTCAAGTTTTCCGAGCGATTAA
AA sequence Show only first row Show all	>Potri.002G228400.1 pacid=42778677 polypeptide=Potri.002G228400.1.p locus=Potri.002G228400 ID=Potri.002G228400.1.v4.1 annot-version=v4.1 MAKGSGGLSIDSDPIATSGYFLHKSTVLTSFPEENINPKWKHLAATSARQSMDVKANRSPPSTFQFPVKLINTNEHDHDHDPDSSLPSDNRRRTVIDEMD FFADKKHDVDRMTIINNGTGDLKDSGSPAGLELNVNTGLNLLTTNTSSEQSTVDDGVSSNMEDKRAKSELAVLRAEVERMKVENLRLKGMLNHVTSNYNA LQMDLVTLMQDQNSHHKNEQRDGKNKDDGVVPRQCMDLGLVAAAGGDDTDDHSLSTSEGGRRRDRSRSSGNNAENNNEDGTVFEQDKKGTDQREESPDQG WGSNKAARFNSTKTVDQTEATIRKARVSVRARSEDATISDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILTTTYEGNHSHPLPP AATAMASTTSSAARMLLSGSMSSTDGLMNSNFLTRTILPCSSSLATISASAPFPTVTLDLTQNPSPLQLPKQPIQFQFPFPNPPQNLATASAAALLPQIL GQALYNQSKSFGLQMSQEMQPNRLDHQSQPALQQGQKNSLADSLTTATAAIAADPNFTAALAAAITSIIGGAHQNNINSINNVQTTTSNNNSNGNITTSN NNSYGHNKITNSSFPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	0	1
AT4G37290			unknown protein		Potri.007G049500 [exp]	1.00	0.9784
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	2.00	0.9524
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	2.82	0.9651
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.005G195000 [exp]	3.16	0.9480
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.004G179300 [exp]	3.16	0.9365	Pt-ZOG1.14
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	3.74	0.9447
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	4.24	0.9473
AT2G14095			unknown protein		Potri.002G101500 [exp]	5.19	0.9398
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	6.24	0.9551
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	7.41	0.9354

Compare expression of checked genes

Potri.002G228400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.