Plant FIBer expression Database

Potri.002G228600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32480 564 / 0 ARASP ARABIDOPSIS SERIN PROTEASE (.1.2)
AT1G05140 526 / 0 Peptidase M50 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G154000
[exp]
685 / 0 AT2G32480 548 / 0.0 ARABIDOPSIS SERIN PROTEASE (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027190
[exp]
190 / 4e-59 AT1G05140 233 / 2e-76 Peptidase M50 family protein (.1)
Lus10035276
[exp]
191 / 5e-59 AT1G05140 232 / 1e-75 Peptidase M50 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF02163 Peptidase_M50 Peptidase family M50
CL0466 PDZ-like PF13180 PDZ_2 PDZ domain
Representative CDS sequence
>Potri.002G228600.1 pacid=42776913 polypeptide=Potri.002G228600.1.p locus=Potri.002G228600 ID=Potri.002G228600.1.v4.1 annot-version=v4.1
ATGCTAATAAGCTTATCTTCCTCTCTATCCCCTTCCCCTTCATCTTCTCTCCCTAGATTTTCTAACTCAAAGTCACCCATTTTAGAGTCATCCTCATTAA
AGCGCAAAACCACCCATTTTTTTAAACCTCTTTCCTCTTCGCTTTGCTATTCATCAAACCTCAATTTTCACTCCAAGACTCCCCTTTTCACCAGATGCCC
TCTTGGGAAAAGGTTGGACTTTAGGTCATGGGCTGTCTCTGGATTTGACTTAGGGAACTTTGAATCTGTTTTAGAGGCAGTTGGAGTGTTGACAGCCATT
ATTGTTGTTCATGAAGGTGGTCATTTCCTTGCTGCTTATCTACAGGGTATTCATGTAAGTAAATTTGCTGTTGGGTTTGGTCCAATTTTAGCTAAATTTA
ATGCAAGGAACGTTGAATATTCTATTAGAGCTTTTCCTTTGGGTGGGTTTGTGGGGTTTCCTGATAATGATCCGGAGAGCGACATACCAGTAGATGATGA
GAATTTGCTTAAGAATAGACCGATATTGGATAGAACGATAGTGATATCAGCTGGTGTTATTGCCAATATCATCTTTGCTTATGCTATAATCCTTGCTCAA
GTATTATCAGTTGGTTTGCCTGTGCAAGAGGCCTTTCCTGGGGTGCTTGTTCCTGAAGTTCAAGCCTTTTCTGCTGCTTCCCGTGATGGGTTGCTTCCCG
GCGATGTAATTCTTGCTGTTAATGGAACGAATTTGCCTAAAACTGGGCCCAATGCAGTGTCCGAGGTTGTTGATGTCATTAAGAGTAGTCCTAACAAGAA
TGTGTTGCTTAAGGTTGAGAGGGGGGAACAGAATTTTGAAATTGGTGTCACCCCGGATGAGAGTTTTGATGGAACAGGTAAAATTGGAGTTCAATTATCA
AACAATGTAAAGATTACCAAGGCTATAGCTAAGAACATCTTCGAGGCATTTAATTTTGCTGGAGAAGAATTTTGGGGTCTTTCATCCAATGTGGTGGATA
GCTTGAAACAAACTTTTTCAAACTTCTCTCAATCAGCAAGCAAGGTATCAGGTCCAGTCGCTATAATTGCTGTTGGTGCAGAAGTTGCAAGGTCAAATAT
TGATGGACTTTACCAATTTGCAGCTGTGCTCAATATTAATCTTGCAGTGATAAACCTCCTTCCATTACCTGCTTTGGATGGGGGCTCCCTGGCCTTCATT
CTCATAGAAGCAGCTAGGGGTGGGAGAAAGCTCCCTTTAGAAATAGAGCAGCGGATTATGTCATCCGGGATCGTGCTTGTTATTACCCTTGGATTTTTTC
TTATTGTTCGGGATACCCTAAACCTTGATTTCATCAAAGATATGTTGTGA
AA sequence
>Potri.002G228600.1 pacid=42776913 polypeptide=Potri.002G228600.1.p locus=Potri.002G228600 ID=Potri.002G228600.1.v4.1 annot-version=v4.1
MLISLSSSLSPSPSSSLPRFSNSKSPILESSSLKRKTTHFFKPLSSSLCYSSNLNFHSKTPLFTRCPLGKRLDFRSWAVSGFDLGNFESVLEAVGVLTAI
IVVHEGGHFLAAYLQGIHVSKFAVGFGPILAKFNARNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRTIVISAGVIANIIFAYAIILAQ
VLSVGLPVQEAFPGVLVPEVQAFSAASRDGLLPGDVILAVNGTNLPKTGPNAVSEVVDVIKSSPNKNVLLKVERGEQNFEIGVTPDESFDGTGKIGVQLS
NNVKITKAIAKNIFEAFNFAGEEFWGLSSNVVDSLKQTFSNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAVLNINLAVINLLPLPALDGGSLAFI
LIEAARGGRKLPLEIEQRIMSSGIVLVITLGFFLIVRDTLNLDFIKDML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.002G228600
[exp]
0 1
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Potri.018G028500
[exp]
1.41 0.9687
AT5G11330 FAD/NAD(P)-binding oxidoreduct... Potri.018G032500
[exp]
2.23 0.9576
AT3G15580 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ub... Potri.002G189450
[exp]
2.44 0.9588
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
2.44 0.9695
AT2G41705 camphor resistance CrcB family... Potri.005G174600
[exp]
6.16 0.9470
AT3G19220 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U ME... Potri.009G102400
[exp]
7.74 0.9517
AT1G12410 EMB3146, CLP2, ... NUCLEAR-ENCODED CLP PROTEASE P... Potri.001G115900
[exp]
8.48 0.9584 CLPR2.1
AT1G28150 unknown protein Potri.004G066900
[exp]
9.53 0.9512
AT3G10350 P-loop containing nucleoside t... Potri.010G225100
[exp]
9.79 0.9569
AT4G02790 EMB3129 EMBRYO DEFECTIVE 3129, GTP-bin... Potri.005G209900
[exp]
10.19 0.9529

Potri.002G228600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.